RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 ZBTB48P10074 688 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CYP11B2P19099 503 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 MRPL12P52815 198 aaKnown RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 EXOC3L4Q17RC7 722 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 H2AFVQ71UI9 128 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CACNA2D3Q8IZS8 1091 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC24Q8N4L8 307 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 GJA10Q969M2 543 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 ZHX3Q9H4I2 956 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CXorf56Q9H5V9 222 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 GPCPD1Q9NPB8 672 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 AMACRQ9UHK6 382 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 TM4SF1P30408 202 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 CLK2P49760 499 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 PTPROQ16827 1216 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 DPY19L2P1Q6NXN4 242 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 TMC3Q7Z5M5 1100 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 SLFN11Q7Z7L1 901 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 RAPGEF5Q92565 580 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 SEC16BQ96JE7 1060 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 CD248Q9HCU0 757 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 INTUQ9ULD6 942 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 THRAP3Q9Y2W1 955 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 UTP11Q9Y3A2 253 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 PITPNM2Q9BZ72 1349 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 POTEB3A0JP26 581 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 FRMD3A2A2Y4 597 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 POTECB2RU33 542 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 CCDC172P0C7W6 258 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 PON1P27169 355 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 FLT3P36888 993 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 NPEPPSP55786 919 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 KRT71Q3SY84 523 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 POTEBQ6S5H4 581 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 LRRC47Q8N1G4 583 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 PROCA1Q8NCQ7 364 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 SEC14L1Q92503 715 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 P3H4Q92791 437 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 ZKSCAN4Q969J2 545 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 CNOT10Q9H9A5 744 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 MTMR4Q9NYA4 1195 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 NARFQ9UHQ1 456 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 STXBP5LQ9Y2K9 1186 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 ZNF335Q9H4Z2 1342 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 COL16A1Q07092 1604 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 ARFGEF1Q9Y6D6 1849 aa12.89□□□□□ -0.35
VIPAS39-211ENST00000557658 TTI1O43156 1089 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 XRCC5P13010 732 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 ITGA4P13612 1032 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 MAGOHP61326 146 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 DHX9Q08211 1270 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 QPCTQ16769 361 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 ANKRD20A8PQ5CZ79 823 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 GKAP1Q5VSY0 366 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 DAAM2Q86T65 1068 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 CCDC50Q8IVM0 306 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 MAGOHBQ96A72 148 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 OSBPL7Q9BZF2 842 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 JMJD4Q9H9V9 463 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 CNOT8Q9UFF9 292 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 SWAP70Q9UH65 585 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 NENFQ9UMX5 172 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 TRAF3IP3Q9Y228 551 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 SPATA31A1Q5TZJ5 1347 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 PLIN4Q96Q06 1357 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 TNRC6CQ9HCJ0 1690 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 COL24A1Q17RW2 1714 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 F8VZ95 297 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 CALUO43852 315 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 SNHG28P0DPA3 235 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 EIF3BP55884 814 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 IFFO1Q0D2I5 559 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 SPDYCQ5MJ68 293 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 CPLX4Q7Z7G2 160 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 RBM46Q8TBY0 533 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 TATDN2Q93075 761 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 PSMD1Q99460 953 aa12.88□□□□□ -0.35
VIPAS39-211ENST00000557658 CNTNAP4Q9C0A0 1308 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 PPARDQ03181 441 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 NT5DC3Q86UY8 548 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 DNAAF5Q86Y56 855 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 ADGRF4Q8IZF3 695 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 DHX36Q9H2U1 1008 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 AMFRQ9UKV5 643 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 ZNF831Q5JPB2 1677 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 KCNQ2O43526 872 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 SLC12A3P55017 1021 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 ZNF543Q08ER8 600 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 EPHA7Q15375 998 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 SNCBQ16143 134 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 KNOP1Q1ED39 458 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 LACTB2Q53H82 288 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 ARSHQ5FYA8 562 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 DCAF17Q5H9S7 520 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 TAX1BP1Q86VP1 789 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 PARP9Q8IXQ6 854 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 HES6Q96HZ4 224 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 MXD3Q9BW11 206 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 RAB17Q9H0T7 212 aa12.87□□□□□ -0.35
VIPAS39-211ENST00000557658 DPH5Q9H2P9 285 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms