RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ATP8B4Q8TF62 1192 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 TMX1Q9H3N1 280 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 ERAP1Q9NZ08 941 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 PKD2L1Q9P0L9 805 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 PADI3Q9ULW8 664 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 TRPV2Q9Y5S1 764 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 TAF6LQ9Y6J9 622 aa9.41□□□□□ -0.9
CCDC88C-214ENST00000557507 ZNF292O60281 2723 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 PPFIA3O75145 1194 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 ATF7P17544 494 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 ITGB5P18084 799 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 IBSPP21815 317 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 SP100P23497 879 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 AVPR2P30518 371 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 PAK2Q13177 524 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 AAMPQ13685 434 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 TMEM266Q2M3C6 531 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 NLRX1Q86UT6 975 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 SMARCC2Q8TAQ2 1214 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 TRAPPC12Q8WVT3 735 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 GLG1Q92896 1179 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 GPRASP2Q96D09 838 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 CCDC136Q96JN2 1154 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 PCYT2Q99447 389 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 FTHL17Q9BXU8 183 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 OSBPL3Q9H4L5 887 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 TLE6Q9H808 572 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 TLR9Q9NR96 1032 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 CDH22Q9UJ99 828 aa9.4□□□□□ -0.9
CCDC88C-214ENST00000557507 H0Y858 1186 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 PIK3CDO00329 1044 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 IFIT3O14879 490 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 FSCN2O14926 492 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 MGEA5O60502 916 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 STAG3L1P0CL83 205 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 INSRRP14616 1297 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 ERVFC1P60507 584 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 KCNC3Q14003 757 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 DUSP6Q16828 381 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 IER5Q5VY09 327 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 B4GALNT3Q6L9W6 998 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 XRRA1Q6P2D8 792 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 ASCL5Q7RTU5 278 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 SMC5Q8IY18 1101 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 GIMAP8Q8ND71 665 aaPredicted RBP9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 SEPT1Q8WYJ6 367 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 ATOH1Q92858 354 aaPredicted RBP9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 NEK1Q96PY6 1258 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 APOL5Q9BWW9 433 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 S1PR5Q9H228 398 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 RNF39Q9H2S5 420 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 SMARCAD1Q9H4L7 1026 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 SQORQ9Y6N5 450 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 OTOGLQ3ZCN5 2332 aa9.39□□□□□ -0.91
CCDC88C-214ENST00000557507 SPTBN2O15020 2390 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 TPRP12270 2363 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 WDR87Q6ZQQ6 2873 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 KDM3AQ9Y4C1 1321 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 DOCK6Q96HP0 2047 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 TBKBP1A7MCY6 615 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 HIP1O00291 1037 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 FGF18O76093 207 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 CYP21A2P08686 494 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 SARSP49591 514 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 ANTXR2P58335 489 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 UBE3AQ05086 875 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 APOBRQ0VD83 1088 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 MTMR1Q13613 665 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 WTAPQ15007 396 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 UBE2SQ16763 222 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 PLPP4Q5VZY2 271 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 SYCE2Q6PIF2 218 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 COLGALT1Q8NBJ5 622 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 MICAL1Q8TDZ2 1067 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 TMEM40Q8WWA1 233 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 CUL5Q93034 780 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 MYL10Q9BUA6 226 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 SPZ1Q9BXG8 430 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 CELF4Q9BZC1 486 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 ERVK-5Q9HDB9 667 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 LRFN2Q9ULH4 789 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 PCDHA2Q9Y5H9 948 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 UBIAD1Q9Y5Z9 338 aa9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 MTCL1Q9Y4B5 1905 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-214ENST00000557507 MIA3Q5JRA6 1907 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 NCOR2Q9Y618 2525 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 PRR23AA6NEV1 266 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 RRN3P2A6NIE6 340 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 PROB1E7EW31 1015 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 M0QZ92 97 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 GALR2O43603 387 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 PLEKHA8P1O95397 391 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 RPLP2P05387 115 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 TECP42680 631 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 IRX6P78412 446 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 KRT76Q01546 638 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 NFX1Q12986 1120 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 TRDNQ13061 729 aa9.37□□□□□ -0.91
CCDC88C-214ENST00000557507 PLCB4Q15147 1175 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms