RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PDXKO00764 312 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 CALUO43852 315 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 EIF2AK2P19525 551 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 GUCY2CP25092 1073 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 MARSP56192 900 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 MRPS9P82933 396 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PPIL2Q13356 520 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 DGKZQ13574 1117 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 BAATQ14032 418 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 TMEM132BQ14DG7 1078 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ELF2Q15723 593 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ZNF746Q6NUN9 644 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 RINT1Q6NUQ1 792 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 VSIG10LQ86VR7 867 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 TMTC1Q8IUR5 882 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ZNF592Q92610 1267 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 SENP7Q9BQF6 1050 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PARVGQ9HBI0 331 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 RGL1Q9NZL6 768 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 TRAF3IP3Q9Y228 551 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 FHOD1Q9Y613 1164 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 LOXHD1Q8IVV2 1947 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 A0A0G2JLL6 359 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 A0A1W2PQJ5 194 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ARHGEF35A5YM69 484 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 GLTPD2A6NH11 291 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ADM5C9JUS6 153 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 GYPCP04921 128 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 NR3C2P08235 984 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PNMA6AP0CW24 399 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 RPL13P26373 211 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 QARSP47897 775 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PSMC6P62333 389 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 RBL2Q08999 1139 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 TBC1D8BQ0IIM8 1120 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 CTTNQ14247 550 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 E4F1Q66K89 784 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 LRRC55Q6ZSA7 311 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 FASTKD5Q7L8L6 764 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PRRT2Q7Z6L0 340 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 RIOX2Q8IUF8 465 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 TMEM139Q8IV31 216 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ZC3H3Q8IXZ2 948 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 CDCA5Q96FF9 252 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 INPP4AQ96PE3 977 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 MPHOSPH6Q99547 160 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 ZHX3Q9H4I2 956 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 FAM184BQ9ULE4 1060 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 KCNH4Q9UQ05 1017 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 LUC7L2Q9Y383 392 aaKnown RBP13.95□□□□□ -0.18
SHMT2-229ENST00000557348 NFASCO94856 1347 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 TRAF5O00463 557 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CETN3O15182 167 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 DHX15O43143 795 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 MAPTP10636 758 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 MYCLP12524 364 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CASP14P31944 242 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 ZNF131P52739 623 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 IRX3P78415 501 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 NFIL3Q16649 462 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 KNOP1Q1ED39 458 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 VWA3BQ502W6 1294 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CYP26C1Q6V0L0 522 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 C1orf186Q6ZWK4 172 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 EPM2AIP1Q7L775 607 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 SFR1Q86XK3 245 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 C4orf19Q8IY42 314 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 GPR161Q8N6U8 529 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 IL31RAQ8NI17 732 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 GOLGA5Q8TBA6 731 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 GTF3C2Q8WUA4 911 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 SCFD1Q8WVM8 642 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 HPS3Q969F9 1004 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 EXOC4Q96A65 974 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CCDC43Q96MW1 224 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 UIMC1Q96RL1 719 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 NDST4Q9H3R1 872 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 YY1AP1Q9H869 796 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 TYW1Q9NV66 732 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CYP39A1Q9NYL5 469 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 CAPN11Q9UMQ6 739 aa13.94□□□□□ -0.18
SHMT2-229ENST00000557348 GOLGB1Q14789 3259 aaKnown RBP13.94□□□□□ -0.18
SHMT2-229ENST00000557348 UTRNP46939 3433 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 POTEB2H3BUK9 544 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 IRF6O14896 467 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 COBLO75128 1261 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 SLC25A27O95847 323 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 TRIM21P19474 475 aaKnown RBP13.93□□□□□ -0.18
SHMT2-229ENST00000557348 ADKP55263 362 aaKnown RBP13.93□□□□□ -0.18
SHMT2-229ENST00000557348 PSMC5P62195 406 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 PRKG1Q13976 671 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 CCDC40Q4G0X9 1142 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 ZNF784Q8NCA9 323 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-229ENST00000557348 OR8K1Q8NGG5 319 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 PPP1R13BQ96KQ4 1090 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 RUSC1Q9BVN2 902 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 EDEM3Q9BZQ6 932 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 KCTD10Q9H3F6 313 aa13.93□□□□□ -0.18
SHMT2-229ENST00000557348 MRPL44Q9H9J2 332 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms