RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 IL17AQ16552 155 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 TMEM266Q2M3C6 531 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 DHX38Q92620 1227 aaKnown RBP19.64■□□□□ 0.73
SHMT2-225ENST00000556798 DYDC2Q96IM9 177 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 EIF2AK1Q9BQI3 630 aaKnown RBP19.64■□□□□ 0.73
SHMT2-225ENST00000556798 LXNQ9BS40 222 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 NOC4LQ9BVI4 516 aaKnown RBP19.64■□□□□ 0.73
SHMT2-225ENST00000556798 HIPK3Q9H422 1215 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 WRAP73Q9P2S5 460 aaPredicted RBP19.64■□□□□ 0.73
SHMT2-225ENST00000556798 CLIC4Q9Y696 253 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 NRCAMQ92823 1304 aa19.64■□□□□ 0.73
SHMT2-225ENST00000556798 LAD1O00515 517 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 HBP1O60381 514 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 GNAT1P11488 350 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 CYP2C18P33260 490 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 ANP32AP39687 249 aaKnown RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 QARSP47897 775 aaKnown RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 PSMC5P62195 406 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 ADAM17P78536 824 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 MDM2Q00987 491 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 CEBPZQ03701 1054 aaKnown RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 FOXD4L6Q3SYB3 417 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 FOXD4L3Q6VB84 417 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 BBXQ8WY36 941 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 FAM167AQ96KS9 214 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 SEPT9Q9UHD8 586 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-225ENST00000556798 TUBE1Q9UJT0 475 aa19.63■□□□□ 0.73
SHMT2-225ENST00000556798 RBAK-RBAKDNI3L0D1 243 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 TIMP1P01033 207 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 P4HBP07237 508 aaKnown RBP19.62■□□□□ 0.73
SHMT2-225ENST00000556798 PDIA4P13667 645 aaKnown RBP19.62■□□□□ 0.73
SHMT2-225ENST00000556798 PRPHP41219 470 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 FXR2P51116 673 aaKnown RBP eCLIP19.62■□□□□ 0.73
SHMT2-225ENST00000556798 PTK7Q13308 1070 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 MARCH8Q5T0T0 291 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 RUFY4Q6ZNE9 571 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 SERINC5Q86VE9 423 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 BADQ92934 168 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 USP28Q96RU2 1077 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 SH2D3AQ9BRG2 576 aa19.62■□□□□ 0.73
SHMT2-225ENST00000556798 COL1A2P08123 1366 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 RRN3P2A6NIE6 340 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 ZBTB42B2RXF5 422 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 STBD1O95210 358 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 MAGEA10P43363 369 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-225ENST00000556798 CCL23P55773 120 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 PLA2G4FQ68DD2 849 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 DTHD1Q6ZMT9 781 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 TPH2Q8IWU9 490 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 TNPO1Q92973 898 aaKnown RBP19.61■□□□□ 0.73
SHMT2-225ENST00000556798 WNT8AQ9H1J5 351 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 DAXXQ9UER7 740 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-225ENST00000556798 ZDHHC9Q9Y397 364 aa19.61■□□□□ 0.73
SHMT2-225ENST00000556798 TET1Q8NFU7 2136 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 MBLAC1A4D2B0 266 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-225ENST00000556798 VWA3AA6NCI4 1184 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 DDX11L8A8MPP1 907 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 PP2D1A8MPX8 630 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 MED24O75448 989 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 SLITRK3O94933 977 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 BRD1O95696 1058 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 PTPAQ15257 358 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 TRIM71Q2Q1W2 868 aaKnown RBP19.6■□□□□ 0.73
SHMT2-225ENST00000556798 MTERF2Q49AM1 385 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 XKR3Q5GH77 459 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 ZNF484Q5JVG2 852 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 MTHFD1LQ6UB35 978 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 NEK9Q8TD19 979 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 HSD17B14Q9BPX1 270 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 LBHD1Q9BQE6 289 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-225ENST00000556798 NRBP2Q9NSY0 501 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 LRWD1Q9UFC0 647 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 CEP131Q9UPN4 1083 aa19.6■□□□□ 0.73
SHMT2-225ENST00000556798 DKC1O60832 514 aaKnown RBP eCLIP19.59■□□□□ 0.73
SHMT2-225ENST00000556798 BMP15O95972 392 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 THPOP40225 353 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 BFSP2Q13515 415 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 ANO5Q75V66 913 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 CCDC155Q8N6L0 562 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 IGSF22Q8N9C0 903 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 ERMNQ8TAM6 284 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 CAGE1Q8TC20 777 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 SCLYQ96I15 445 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 RAB34Q9BZG1 259 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 FAM49AQ9H0Q0 323 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-225ENST00000556798 ZSWIM4Q9H7M6 989 aa19.59■□□□□ 0.73
SHMT2-225ENST00000556798 A0A087WWV3 80 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 PITPNM1O00562 1244 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 ZBTB39O15060 712 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 C22orf31O95567 290 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 CTSHP09668 335 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 SPATA31C1P0DKV0 1188 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 CKBP12277 381 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 KLRC1P26715 233 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 MARCKSP29966 332 aaPredicted RBP19.58■□□□□ 0.72
SHMT2-225ENST00000556798 CDC25AP30304 524 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 YWHABP31946 246 aaKnown RBP19.58■□□□□ 0.72
SHMT2-225ENST00000556798 GRIN1Q05586 938 aa19.58■□□□□ 0.72
SHMT2-225ENST00000556798 ARL6IP4Q66PJ3 421 aaKnown RBP19.58■□□□□ 0.72
SHMT2-225ENST00000556798 MFSD5Q6N075 450 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms