RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ZC2HC1CQ53FD0 456 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 APOBEC3FQ8IUX4 373 aaKnown RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 KLRG1Q96E93 195 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 RMDN3Q96TC7 470 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 EHMT1Q9H9B1 1298 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 RNF146Q9NTX7 359 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 TRIM10Q9UDY6 481 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 CLIC2O15247 247 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 GCNT3O95395 438 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 LRRC63Q05C16 580 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 ZCWPW2Q504Y3 356 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 RNF207Q6ZRF8 634 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 MOB2Q70IA6 237 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 GPC2Q8N158 579 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 JRKLQ9Y4A0 524 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 ATP9AO75110 1047 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 TBCAO75347 108 aaKnown RBP12.88□□□□□ -0.35
SHMT2-212ENST00000554467 TKFCQ3LXA3 575 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 FKBP15Q5T1M5 1219 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 WDR59Q6PJI9 974 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 POLR3CQ9BUI4 534 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-212ENST00000554467 TEKT3Q9BXF9 490 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 FUT8Q9BYC5 575 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 SSC5DA1L4H1 1573 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 EYA4O95677 639 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 MYCNP04198 464 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-212ENST00000554467 PLEKP08567 350 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-212ENST00000554467 LMAN1P49257 510 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 SEMA3FQ13275 785 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 PPP2R5CQ13362 524 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 COBLL1Q53SF7 1204 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 MYCT1Q8N699 235 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 OR8K1Q8NGG5 319 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 DRC1Q96MC2 740 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 NCAPGQ9BPX3 1015 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 KCTD10Q9H3F6 313 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 TELO2Q9Y4R8 837 aa12.88□□□□□ -0.35
SHMT2-212ENST00000554467 PPP1R2P41236 205 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 USP14P54578 494 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 FKBP3Q00688 224 aaKnown RBP12.87□□□□□ -0.35
SHMT2-212ENST00000554467 ADAM9Q13443 819 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 MTMR1Q13613 665 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 A0A1W2PQC6 194 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 ANKRD65E5RJM6 399 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 PGM5Q15124 567 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 ARHGEF16Q5VV41 709 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 CYP26C1Q6V0L0 522 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 MIER3Q7Z3K6 550 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 MCF2L2Q86YR7 1114 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 SPON1Q9HCB6 807 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 ZNF112Q9UJU3 913 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 CAPN11Q9UMQ6 739 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 COL4A3BPQ9Y5P4 624 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 FRMD3A2A2Y4 597 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 CCP110O43303 1012 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 TFRCP02786 760 aaKnown RBP12.87□□□□□ -0.35
SHMT2-212ENST00000554467 NR2F2P24468 414 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 TMEM132BQ14DG7 1078 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 MAN2A1Q16706 1144 aa12.87□□□□□ -0.35
SHMT2-212ENST00000554467 FAM13AO94988 1023 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 YBX3P16989 372 aaKnown RBP eCLIP12.86□□□□□ -0.357e-8■□□□□ 9
SHMT2-212ENST00000554467 ACTN2P35609 894 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 VGLL4Q14135 290 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 COG2Q14746 738 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 TMTC1Q8IUR5 882 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 TTYH3Q9C0H2 523 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 AS3MTQ9HBK9 375 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 NLRC4Q9NPP4 1024 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 DHX15O43143 795 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 ATP8B1O43520 1251 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 USP2O75604 605 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 SETQ01105 290 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 CYP27A1Q02318 531 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 TRIM14Q14142 442 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 ENOX2Q16206 610 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 UGCGQ16739 394 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 TREML2Q5T2D2 321 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 NAA15Q9BXJ9 866 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 AGO4Q9HCK5 861 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 PSD3Q9NYI0 1048 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 PUF60Q9UHX1 559 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 REXO2Q9Y3B8 237 aaKnown RBP12.86□□□□□ -0.35
SHMT2-212ENST00000554467 PITPNM2Q9BZ72 1349 aa12.86□□□□□ -0.35
SHMT2-212ENST00000554467 CASP4P49662 377 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 TSR1Q2NL82 804 aaKnown RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 C1orf186Q6ZWK4 172 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 EXOC4Q96A65 974 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 CCDC51Q96ER9 411 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 PXMP2Q9NR77 195 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 ARGLU1Q9NWB6 273 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 SIK3Q9Y2K2 1263 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 RPTORQ8N122 1335 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 MYCBPQ99417 103 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 DNAJC7Q99615 494 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 PDCD2LQ9BRP1 358 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 TUFT1Q9NNX1 390 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 EPN1Q9Y6I3 576 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-212ENST00000554467 DOCK1Q14185 1865 aa12.85□□□□□ -0.35
SHMT2-212ENST00000554467 COL11A1P12107 1806 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms