RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 PDE4DQ08499 809 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 SPIRE1Q08AE8 756 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L24Q0WX57 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 STK4Q13043 487 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 TNFAIP1Q13829 316 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 KRT31Q15323 416 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 KLHL10Q6JEL2 608 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 FOXR1Q6PIV2 292 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L6PQ6QN14 398 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 REXO1L1PQ8IX06 675 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 GUF1Q8N442 669 aaKnown RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 RASSF8Q8NHQ8 419 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 ETNPPLQ8TBG4 499 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 JDP2Q8WYK2 163 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 P2RX5Q93086 422 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 LENG9Q96B70 501 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 DNAJC19Q96DA6 116 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 P2RX7Q99572 595 aaKnown RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 BAG1Q99933 345 aaPredicted RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 DUSP9Q99956 384 aaKnown RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 ARHGAP9Q9BRR9 750 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 TAOK3Q9H2K8 898 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 MYOZ2Q9NPC6 264 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 EXOC1Q9NV70 894 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 MAP3K20Q9NYL2 800 aaKnown RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 FEM1BQ9UK73 627 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 CTNND2Q9UQB3 1225 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 GDAQ9Y2T3 454 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 MRPL11Q9Y3B7 192 aaKnown RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 RLFQ13129 1914 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 PITPNM2Q9BZ72 1349 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 DOCK1Q14185 1865 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 RBBP6Q7Z6E9 1792 aaKnown RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 MYH10P35580 1976 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 CLRN2A0PK11 232 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 FRMD3A2A2Y4 597 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 SPDYE3A6NKU9 549 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 USP27XA6NNY8 438 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KCNJ18B7U540 433 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 N4BP3O15049 544 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 FGFR1OPO95684 399 aaKnown RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 ADH1AP07327 375 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 RPA1P27694 616 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 ECE1P42892 770 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 DNM2P50570 870 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 PMS1P54277 932 aaKnown RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 ASIC1P78348 528 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KCNJ12Q14500 433 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 MCM6Q14566 821 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 FIGNQ5HY92 759 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KIAA1755Q5JYT7 1200 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 CEP135Q66GS9 1140 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 PPFIBP1Q86W92 1011 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 CNGA4Q8IV77 575 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 FAM114A1Q8IWE2 563 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KDF1Q8NAX2 398 aaPredicted RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 RETREG2Q8NC44 543 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KIF18AQ8NI77 898 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 ACER1Q8TDN7 264 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 SNX29Q8TEQ0 813 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 LPAR1Q92633 364 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 IQCDQ96DY2 449 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 CDK5RAP3Q96JB5 506 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 PPP1R13BQ96KQ4 1090 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 TEPSINQ96N21 525 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 PLIN2Q99541 437 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 POLR3CQ9BUI4 534 aaPredicted RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 NUP58Q9BVL2 599 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 SRRTQ9BXP5 876 aaKnown RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 TMEM39BQ9GZU3 492 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 MAF1Q9H063 256 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 PNMA2Q9UL42 364 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 RABGAP1Q9Y3P9 1069 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 COL11A1P12107 1806 aaPredicted RBP6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 KIAA1217Q5T5P2 1943 aa6.7□□□□□ -1.34
VIPAS39-204ENST00000553576 IGLV3-22A0A075B6J6 115 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 LGALS16A8MUM7 142 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 NFKBIEO00221 500 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 WDR46O15213 610 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 MARCH6O60337 910 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 CTNND1O60716 968 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 LILRB3O75022 631 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 FCER1AP12319 257 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 CCT6AP40227 531 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 SLC12A3P55017 1021 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 ADKP55263 362 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 ETF1P62495 437 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 SNRPNP63162 240 aaKnown RBP6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 LRRC63Q05C16 580 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 RBL2Q08999 1139 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 RASA3Q14644 834 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 ECM1Q16610 540 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 DBN1Q16643 649 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 NBPF9Q3BBW0 867 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 HSP90AA4PQ58FG1 418 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 HAUS3Q68CZ6 603 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 ANKRD40Q6AI12 368 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 TRIM65Q6PJ69 517 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 ARHGAP27Q6ZUM4 889 aa6.69□□□□□ -1.34
VIPAS39-204ENST00000553576 NIPA1Q7RTP0 329 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms