RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 KIF28PB7ZC32 967 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 NBNO60934 754 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 GJB5O95377 273 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 APPP05067 770 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 KCNJ6P48051 423 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 ERVK-21P61565 698 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 LEXMQ3ZCV2 418 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SYDE2Q5VT97 1194 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 FAM178BQ8IXR5 827 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SIX5Q8N196 739 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 RETREG2Q8NC44 543 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 CAGE1Q8TC20 777 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SCFD2Q8WU76 684 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 DCAF4Q8WV16 495 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 KAT2BQ92831 832 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 CALR3Q96L12 384 aaKnown RBP8.58□□□□□ -1.04
ATXN3-219ENST00000553488 NACAP1Q9BZK3 213 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 FTOQ9C0B1 505 aaKnown RBP eCLIP8.58□□□□□ -1.04
ATXN3-219ENST00000553488 NAPBQ9H115 298 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SUGCTQ9HAC7 445 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 INCENPQ9NQS7 918 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SCHIP1Q9P0W5 487 aaPredicted RBP8.58□□□□□ -1.04
ATXN3-219ENST00000553488 SERTAD1Q9UHV2 236 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 WDR19Q8NEZ3 1342 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 PTPDC1A2A3K4 754 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 TSPY2A6NKD2 308 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 BACH1O14867 736 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 KPNA6O60684 536 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 MMP3P08254 477 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 FGRP09769 529 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 IL9P15248 144 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 SELPP16109 830 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 CALML3P27482 149 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 MSX1P28360 303 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 SLC16A2P36021 539 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 ATP1A2P50993 1020 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 RPS6P62753 249 aaKnown RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 PTGISQ16647 500 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 CCDC96Q2M329 555 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 TRIM71Q2Q1W2 868 aaKnown RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 BRDTQ58F21 947 aaPredicted RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 ZMYM1Q5SVZ6 1142 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 GDF6Q6KF10 455 aaPredicted RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 CCDC62Q6P9F0 684 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 CNKSR3Q6P9H4 555 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 RNF207Q6ZRF8 634 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 RIPOR1Q6ZS17 1223 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 LRRC8DQ7L1W4 858 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 ALYREFQ86V81 257 aaKnown RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 GJD3Q8N144 294 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 PI4K2BQ8TCG2 481 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 TGS1Q96RS0 853 aaKnown RBP8.57□□□□□ -1.04
ATXN3-219ENST00000553488 CRISPLD1Q9H336 500 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 DOCK5Q9H7D0 1870 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 KIAA1671Q9BY89 1806 aa8.57□□□□□ -1.04
ATXN3-219ENST00000553488 FRMPD2Q68DX3 1309 aaPredicted RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 KMT2EQ8IZD2 1858 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 M0R2N6 131 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 ORC4O43929 436 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 SLC3A2P08195 630 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 TXNP10599 105 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 ATP4AP20648 1035 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 ARHGAP1Q07960 439 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 MBTPS1Q14703 1052 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 LBRQ14739 615 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 DNERQ8NFT8 737 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 NEK9Q8TD19 979 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 WNT8BQ93098 351 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 GPATCH3Q96I76 525 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 RAD9AQ99638 391 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 NIFKQ9BYG3 293 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 NUCKS1Q9H1E3 243 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 DCTPP1Q9H773 170 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 DNAAF2Q9NVR5 837 aaKnown RBP8.56□□□□□ -1.04
ATXN3-219ENST00000553488 GTF2IRD1Q9UHL9 959 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 ANAPC4Q9UJX5 808 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 MTUS1Q9ULD2 1270 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 MTMR7Q9Y216 660 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 SPTBN4Q9H254 2564 aa8.56□□□□□ -1.04
ATXN3-219ENST00000553488 ABHD14A-ACY1A0A1B0GW23 586 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 PARNO95453 639 aaKnown RBP8.55□□□□□ -1.04
ATXN3-219ENST00000553488 SNHG28P0DPA3 235 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 PDHBP11177 359 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 CKBP12277 381 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 KCNA5P22460 613 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 HTRA4P83105 476 aaPredicted RBP8.55□□□□□ -1.04
ATXN3-219ENST00000553488 COL19A1Q14993 1142 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 C20orf194Q5TEA3 1177 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 VPS53Q5VIR6 699 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 AFG1LQ8WV93 481 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 TMEM47Q9BQJ4 181 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 C17orf80Q9BSJ5 609 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 DCHS1Q96JQ0 3298 aa8.55□□□□□ -1.04
ATXN3-219ENST00000553488 TTC41PQ6P2S7 1318 aa8.54□□□□□ -1.04
ATXN3-219ENST00000553488 SALL3Q9BXA9 1300 aa8.54□□□□□ -1.04
ATXN3-219ENST00000553488 KAT6AQ92794 2004 aa8.54□□□□□ -1.04
ATXN3-219ENST00000553488 HAS3O00219 553 aa8.54□□□□□ -1.04
ATXN3-219ENST00000553488 RANBP6O60518 1105 aaKnown RBP8.54□□□□□ -1.04
ATXN3-219ENST00000553488 F2P00734 622 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms