RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 BRDTQ58F21 947 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-208ENST00000551691 POMZP3Q6PJE2 187 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 OLFM4Q6UX06 510 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 SAPCD2Q86UD0 394 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 SCUBE1Q8IWY4 988 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 MORC4Q8TE76 937 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 LEO1Q8WVC0 666 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-208ENST00000551691 KLHL6Q8WZ60 621 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 SMAD5Q99717 465 aaKnown RBP4.84□□□□□ -1.63
LIMA1-208ENST00000551691 HAUS7Q99871 368 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 KRTAP4-11Q9BYQ6 195 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.84□□□□□ -1.63
LIMA1-208ENST00000551691 RNF186Q9NXI6 227 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 SUCOQ9UBS9 1254 aaKnown RBP4.84□□□□□ -1.63
LIMA1-208ENST00000551691 TJP2Q9UDY2 1190 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 NDOR1Q9UHB4 597 aa4.84□□□□□ -1.63
LIMA1-208ENST00000551691 MAP2P11137 1827 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 H0YIN7 160 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 PRODHO43272 600 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 OPA1O60313 960 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 ALDH1L1O75891 902 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 CELF2O95319 508 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 EPHX1P07099 455 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 RAC2P15153 192 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 EPS15P42566 896 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 GALK1P51570 392 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 EPHB1P54762 984 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 TBX4P57082 545 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 PPP2R2AP63151 447 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 STRN3Q13033 797 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 OS9Q13438 667 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 NFIXQ14938 502 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 SART3Q15020 963 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 PPP2R5AQ15172 486 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 KCNA10Q16322 511 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 KRTAP19-4Q3LI73 84 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 FAM209AQ5JX71 171 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 SLC6A19Q695T7 634 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 NSMFQ6X4W1 530 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 C22orf34Q6ZV56 151 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 THAP5Q7Z6K1 395 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 CTU1Q7Z7A3 348 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 LRRTM3Q86VH5 581 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 MCATQ8IVS2 390 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 EXOC8Q8IYI6 725 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 SLFN12Q8IYM2 578 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 MYLIPQ8WY64 445 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 ACSF2Q96CM8 615 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 MTMR8Q96EF0 704 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 TMEM87BQ96K49 555 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 Q96M66 194 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 FGD4Q96M96 766 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 TARS2Q9BW92 718 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 MRPL4Q9BYD3 311 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 RNF32Q9H0A6 362 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 ZNF277Q9NRM2 450 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 GEMIN8Q9NWZ8 242 aaKnown RBP4.83□□□□□ -1.64
LIMA1-208ENST00000551691 TMEM59LQ9UK28 342 aa4.83□□□□□ -1.64
LIMA1-208ENST00000551691 KTN1Q86UP2 1357 aaKnown RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 CARMIL3Q8ND23 1372 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TTC21AQ8NDW8 1320 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 ITGB4P16144 1822 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 A0A1W2PQU0 124 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TCAF2A6NFQ2 919 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 H0YGN5 161 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 DNAJA2O60884 412 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 RASGRP1O95267 797 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 MAP4K4O95819 1239 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 SERPINB2P05120 415 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 INHBBP09529 407 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 EN2P19622 333 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 HMGB2P26583 209 aaKnown RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TPP2P29144 1249 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 HOXC9P31274 260 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 BUD31P41223 144 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 KCNJ6P48051 423 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 AMPHP49418 695 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 RNF4P78317 190 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 KIF23Q02241 960 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TIGD5Q53EQ6 642 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 NOL9Q5SY16 702 aaKnown RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 PNMA8AQ86V59 439 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 RAPGEF4Q8WZA2 1011 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 KCNN1Q92952 543 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 USP7Q93009 1102 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 EXOC2Q96KP1 924 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 GLIS2Q9BZE0 524 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TAOK3Q9H2K8 898 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 INTS7Q9NVH2 962 aaKnown RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 TMOD3Q9NYL9 352 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 SMG5Q9UPR3 1016 aaKnown RBP4.82□□□□□ -1.64
LIMA1-208ENST00000551691 RIPOR2Q9Y4F9 1068 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 ADAMTS7Q9UKP4 1686 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 CEP290O15078 2479 aa4.82□□□□□ -1.64
LIMA1-208ENST00000551691 MAP3K19Q56UN5 1328 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 USP42Q9H9J4 1324 aaKnown RBP4.81□□□□□ -1.64
LIMA1-208ENST00000551691 A0A087X0B3 334 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 RGS13O14921 159 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 NUAK1O60285 661 aa4.81□□□□□ -1.64
LIMA1-208ENST00000551691 EFCAB14O75071 495 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms