RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 EXOC6Q8TAG9 804 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 TMX1Q9H3N1 280 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 PSTPIP2Q9H939 334 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 BARX2Q9UMQ3 279 aaPredicted RBP20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 TRPV2Q9Y5S1 764 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 TMEM221A6NGB7 291 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 M0R296 226 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 RPLP2P05387 115 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 SCG2P13521 617 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 KIF5BP33176 963 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 COL9A3Q14050 684 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 CBX2Q14781 532 aaPredicted RBP20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 RBM23Q86U06 439 aaKnown RBP20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 PPP2R3CQ969Q6 453 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 JADE2Q9NQC1 790 aa20.43■□□□□ 0.86
CLSTN3-214ENST00000542663 PLXNA3P51805 1871 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 STAG3L1P0CL83 205 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 PAK2Q13177 524 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 PLCB4Q15147 1175 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 RUFY2Q8WXA3 655 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 PBXIP1Q96AQ6 731 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 LZTS2Q9BRK4 669 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 CELF4Q9BZC1 486 aaKnown RBP20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 JPH1Q9HDC5 661 aaPredicted RBP20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 SLC9A2Q9UBY0 812 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 USP15Q9Y4E8 981 aaPredicted RBP20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 PCDHA2Q9Y5H9 948 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 KDM3AQ9Y4C1 1321 aa20.42■□□□□ 0.86
CLSTN3-214ENST00000542663 ZDBF2Q9HCK1 2354 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 hCG_1642624A0A1W2PR95 340 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 MAFGO15525 162 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 SGSM2O43147 1006 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 ZXDAP98168 799 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 RBM10P98175 930 aaKnown RBP20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 VN1R2Q8NFZ6 395 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 MAP4K1Q92918 833 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 KCNH7Q9NS40 1196 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 PCDHA6Q9UN73 950 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 TRPC6Q9Y210 931 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 PCDHA8Q9Y5H6 950 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 MYO10Q9HD67 2058 aa20.41■□□□□ 0.86
CLSTN3-214ENST00000542663 M0QZ92 97 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 MGEA5O60502 916 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 PPFIA3O75145 1194 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 RXRAP19793 462 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 TMEM266Q2M3C6 531 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 CYP2W1Q8TAV3 490 aa20.4■□□□□ 0.86
CLSTN3-214ENST00000542663 SMIM35A0A1B0GVV1 85 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 SPDYE3A6NKU9 549 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 GNAQP50148 359 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 ACTR2P61160 394 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 TCF15Q12870 199 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 PLPPR4Q7Z2D5 763 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 ATP8B4Q8TF62 1192 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 MXRA8Q9BRK3 442 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 MTA3Q9BTC8 594 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 AZI2Q9H6S1 392 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 HCSTQ9UBK5 93 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 LRFN2Q9ULH4 789 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 CFAP54Q96N23 3096 aa20.39■□□□□ 0.85
CLSTN3-214ENST00000542663 NFASCO94856 1347 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 SH2B2O14492 632 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 PER2O15055 1255 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 PRC1O43663 620 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 SARSP49591 514 aaKnown RBP20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 PTPN5P54829 565 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 KRT76Q01546 638 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 MTHFD1LQ6UB35 978 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 SUSD6Q92537 303 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 PHF7Q9BWX1 381 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 TLE6Q9H808 572 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 CDHR5Q9HBB8 845 aa20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 RBM8AQ9Y5S9 174 aaKnown RBP20.38■□□□□ 0.85
CLSTN3-214ENST00000542663 ARP10275 920 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 STAT5BP51692 787 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 UBE3AQ05086 875 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 ITGB3BPQ13352 177 aaPredicted RBP20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 CASC1Q6TDU7 716 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 RAB11FIP4Q86YS3 637 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 NME8Q8N427 588 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 FBXL6Q8N531 539 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 TMEM40Q8WWA1 233 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 ERVK-5Q9HDB9 667 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 TLR9Q9NR96 1032 aa20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 NOC2LQ9Y3T9 749 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-214ENST00000542663 CCDC69A6NI79 296 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 ATG7O95352 703 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 ATF7P17544 494 aaPredicted RBP20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 IBSPP21815 317 aaPredicted RBP20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 ERVFC1P60507 584 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 SIGLEC14Q08ET2 396 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 NFX1Q12986 1120 aaKnown RBP20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 KCNC3Q14003 757 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 FAM102BQ5T8I3 360 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 NFXL1Q6ZNB6 911 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 SUGP1Q8IWZ8 645 aaKnown RBP20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 CCDC82Q8N4S0 544 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 TNPO1Q92973 898 aaKnown RBP20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 ASIC4Q96FT7 647 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 PGBD1Q96JS3 809 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms