RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 SPATA31A1Q5TZJ5 1347 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 PON1P27169 355 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 BYSLQ13895 437 aaKnown RBP11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 COG2Q14746 738 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 KRT71Q3SY84 523 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 GLE1Q53GS7 698 aaKnown RBP11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 COBLL1Q53SF7 1204 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 DPY19L2P1Q6NXN4 242 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 PEX26Q7Z412 305 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 CPNE8Q86YQ8 564 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 GLYCTKQ8IVS8 523 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 RAPGEF5Q92565 580 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 ELMO3Q96BJ8 720 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 ISCUQ9H1K1 167 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 RIC8AQ9NPQ8 531 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 TAS2R14Q9NYV8 317 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 FRMD3A2A2Y4 597 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 GOLGA6L10A6NI86 522 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 HGSO14964 777 aaPredicted RBP11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 FAM107AO95990 144 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLCO1A2P46721 670 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 USP11P51784 963 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 PRR16Q569H4 304 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 CEP57Q86XR8 500 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 TPCN2Q8NHX9 752 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 CABS1Q96KC9 395 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 REEP2Q9BRK0 252 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC40A1Q9NP59 571 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 TMOD4Q9NZQ9 345 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC12A6Q9UHW9 1150 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 TMEM59LQ9UK28 342 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 PNMA2Q9UL42 364 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 LEMD3Q9Y2U8 911 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 PCDHAC2Q9Y5I4 1007 aa11.32□□□□□ -0.6
CDC42SE1-207ENST00000540998 SMCHD1A6NHR9 2005 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 DDX3XO00571 662 aaKnown RBP eCLIP11.31□□□□□ -0.62e-8■■□□□ 12.9
CDC42SE1-207ENST00000540998 FGGP02679 453 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 PPP1R2P41236 205 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 TBC1D10BQ4KMP7 808 aaPredicted RBP11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 SLC10A5Q5PT55 438 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 DCAF12L1Q5VU92 463 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 TPTE2Q6XPS3 522 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 WHAMMQ8TF30 809 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 SCFD2Q8WU76 684 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 NCAPGQ9BPX3 1015 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 LZTS2Q9BRK4 669 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 CD209Q9NNX6 404 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 PPP1R9AQ9ULJ8 1098 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 CAND2O75155 1236 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 EXOC3L4Q17RC7 722 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 USH1GQ495M9 461 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZC2HC1CQ53FD0 456 aaPredicted RBP11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 ARHGEF1Q92888 912 aaKnown RBP11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 CCDC114Q96M63 670 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 RAB34Q9BZG1 259 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 PSTPIP2Q9H939 334 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 AIPL1Q9NZN9 384 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 GCNT4Q9P109 453 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 TSKSQ9UJT2 592 aa11.31□□□□□ -0.6
CDC42SE1-207ENST00000540998 PGRMC1O00264 195 aaKnown RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 BUB1BO60566 1050 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 FSBPO95073 299 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZBTB48P10074 688 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PLS1Q14651 629 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CCDC38Q502W7 563 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TRMT1LQ7Z2T5 733 aaKnown RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CATSPER3Q86XQ3 398 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CCDC65Q8IXS2 484 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 MREGQ8N565 214 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 RDH13Q8NBN7 331 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 LNX1Q8TBB1 728 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PIGOQ8TEQ8 1089 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZKSCAN4Q969J2 545 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 ARHGEF26Q96DR7 871 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PLCB1Q9NQ66 1216 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 RGL1Q9NZL6 768 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 ARMCX3Q9UH62 379 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TNRC6CQ9HCJ0 1690 aaKnown RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 GOLGA6L7A0A1B0GV03 622 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TMEM110-MUSTN1A8MSY1 372 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 HMGB1P1B2RPK0 211 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CETN3O15182 167 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TRIM49P0CI25 452 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TRIM49CP0CI26 452 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 HOXA13P31271 388 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 MARCKSL1P49006 195 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PPP4CP60510 307 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 GTF2IP78347 998 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PDIA5Q14554 519 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 ZFPM1Q8IX07 1006 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 PROM2Q8N271 834 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 VCPKMTQ9H867 229 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 BMP2KQ9NSY1 1161 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 CDK5RAP2Q96SN8 1893 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 GMNCA6NCL1 334 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 IFNAR2P48551 515 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 GALCP54803 685 aa11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 SAMD1Q6SPF0 538 aaPredicted RBP11.3□□□□□ -0.6
CDC42SE1-207ENST00000540998 TMC3Q7Z5M5 1100 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms