RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 A6NJR5 290 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 ZBTB39O15060 712 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 CTAGE5O15320 804 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 KINO60870 393 aaKnown RBP21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 LYPLA2O95372 231 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 RARBP10826 455 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 HOXD8P13378 290 aaPredicted RBP21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 PDXDC2PQ6P474 469 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 TRIM50Q86XT4 487 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 C4orf19Q8IY42 314 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 PIGOQ8TEQ8 1089 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 ATP6V0A1Q93050 837 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 STK17AQ9UEE5 414 aa21.15■□□□□ 0.98
TNFRSF1A-213ENST00000540022 PPFIA4O75335 1185 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 SLFN14P0C7P3 912 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 ATP4AP20648 1035 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 STAT5BP51692 787 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 GJA9P57773 515 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 CNNM3Q8NE01 707 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 AFAP1L1Q8TED9 768 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 TIGD1Q96MW7 591 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 USP25Q9UHP3 1055 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 EMSYQ7Z589 1322 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 SYNRGQ9UMZ2 1314 aa21.14■□□□□ 0.98
TNFRSF1A-213ENST00000540022 MYADML2A6NDP7 307 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PGK1P00558 417 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 LGALS2P05162 132 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 BEX3Q00994 111 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 FAM160B1Q5W0V3 765 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CEP57L1Q8IYX8 460 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 KCTD17Q8N5Z5 321 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 LARP4BQ92615 738 aaKnown RBP21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 RAD54LQ92698 747 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 NACC1Q96RE7 527 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 UPF3AQ9H1J1 476 aaKnown RBP21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 AZI2Q9H6S1 392 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 XPNPEP3Q9NQH7 507 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 DNM3Q9UQ16 869 aa21.14■□□□□ 0.97
TNFRSF1A-213ENST00000540022 DKC1O60832 514 aaKnown RBP eCLIP21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 STBD1O95210 358 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 TFRCP02786 760 aaKnown RBP21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PRKCEQ02156 737 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MCM6Q14566 821 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 DGKDQ16760 1214 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CAVIN1Q6NZI2 390 aaKnown RBP21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 TRMT1LQ7Z2T5 733 aaKnown RBP21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 STAMQ92783 540 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 GLG1Q92896 1179 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MTRQ99707 1265 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 C16orf70Q9BSU1 422 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CUEDC2Q9H467 287 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 TMEM63CQ9P1W3 806 aa21.13■□□□□ 0.97
TNFRSF1A-213ENST00000540022 TMEM150BA6NC51 233 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 ADAMTS4O75173 837 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 EYA4O95677 639 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 C6orf222P0C671 652 aaPredicted RBP21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 ZNF286BP0CG31 522 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CAPN2P17655 700 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 YWHABP31946 246 aaKnown RBP21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CPT1AP50416 773 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 NKX3-2P78367 333 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 DHX8Q14562 1220 aaKnown RBP21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CAMK4Q16566 473 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 FSCN1Q16658 493 aaKnown RBP21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PLPPR4Q7Z2D5 763 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SH3RF1Q7Z6J0 888 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 GRAMD1CQ8IYS0 662 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CLSTN2Q9H4D0 955 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SMARCAD1Q9H4L7 1026 aa21.12■□□□□ 0.97
TNFRSF1A-213ENST00000540022 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MSCO60682 206 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PLA2G4BP0C869 781 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MARK3P27448 753 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 AFMP43652 599 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 ANO5Q75V66 913 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PAGE5Q96GU1 130 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 NUP62CLQ9H1M0 184 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 BHMT2Q9H2M3 363 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SPC25Q9HBM1 224 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 KBTBD4Q9NVX7 518 aa21.11■□□□□ 0.97
TNFRSF1A-213ENST00000540022 OATP04181 439 aa21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 XRCC6P12956 609 aaKnown RBP eCLIP21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 BRDTQ58F21 947 aaPredicted RBP21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 XKR3Q5GH77 459 aa21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 CKAP2LQ8IYA6 745 aa21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SH2D3AQ9BRG2 576 aa21.1■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MYCNP04198 464 aaPredicted RBP21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SSBP05455 408 aaKnown RBP eCLIP21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MYL3P08590 195 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PRR29P0C7W0 189 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 RARRES1P49788 294 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SLC26A2P50443 739 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SLC12A3P55017 1021 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 MDM2Q00987 491 aaPredicted RBP21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PLCB4Q15147 1175 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 GNASQ5JWF2 1037 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 PLA2G4FQ68DD2 849 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SV2BQ7L1I2 683 aa21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 SYT2Q8N9I0 419 aaPredicted RBP21.09■□□□□ 0.97
TNFRSF1A-213ENST00000540022 KLHDC9Q8NEP7 349 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms