RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 TMEM60Q9H2L4 133 aa12.1□□□□□ -0.47
HMGA2-209ENST00000539662 WRAP73Q9P2S5 460 aaPredicted RBP12.1□□□□□ -0.47
HMGA2-209ENST00000539662 TUBE1Q9UJT0 475 aa12.1□□□□□ -0.47
HMGA2-209ENST00000539662 SAMM50Q9Y512 469 aa12.1□□□□□ -0.47
HMGA2-209ENST00000539662 CDH23Q9H251 3354 aa12.1□□□□□ -0.47
HMGA2-209ENST00000539662 IGSF9BQ9UPX0 1349 aa12.1□□□□□ -0.47
HMGA2-209ENST00000539662 RSPH10B2B2RC85 870 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 CHRNA1P02708 482 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 PSAPP07602 524 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 RSPH10BP0C881 870 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
HMGA2-209ENST00000539662 SPIRE1Q08AE8 756 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 PSRC1Q6PGN9 363 aaPredicted RBP12.09□□□□□ -0.47
HMGA2-209ENST00000539662 MTHFD1LQ6UB35 978 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 MIER3Q7Z3K6 550 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 SMAP1Q8IYB5 467 aaPredicted RBP12.09□□□□□ -0.47
HMGA2-209ENST00000539662 BANK1Q8NDB2 785 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 ATP8B4Q8TF62 1192 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 FTOQ9C0B1 505 aaKnown RBP eCLIP12.09□□□□□ -0.47
HMGA2-209ENST00000539662 FAM49AQ9H0Q0 323 aaPredicted RBP12.09□□□□□ -0.47
HMGA2-209ENST00000539662 BRMS1Q9HCU9 246 aa12.09□□□□□ -0.47
HMGA2-209ENST00000539662 WDR64B1ANS9 1081 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 CXCL10P02778 98 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 MYOGP15173 224 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 KLRC1P26715 233 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 RABGGTBP53611 331 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 PRKCEQ02156 737 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 MGAT3Q09327 533 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 CUL4AQ13619 759 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 ZNF174Q15697 407 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 FAM160B1Q5W0V3 765 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 RPUSD2Q8IZ73 545 aaKnown RBP12.08□□□□□ -0.48
HMGA2-209ENST00000539662 CCDC155Q8N6L0 562 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 ZNF579Q8NAF0 562 aaKnown RBP12.08□□□□□ -0.48
HMGA2-209ENST00000539662 FOXD4L1Q9NU39 408 aa12.08□□□□□ -0.48
HMGA2-209ENST00000539662 A0A087WWV3 80 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 ZBBXA8MT70 800 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 ZBTB39O15060 712 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 HBP1O60381 514 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 C22orf31O95567 290 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 GNAT1P11488 350 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 GCFC2P16383 781 aaKnown RBP12.07□□□□□ -0.48
HMGA2-209ENST00000539662 MCM7P33993 719 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 RFC2P35250 354 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 MCM2P49736 904 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 DEFB103AP81534 67 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 PPP2R5CQ13362 524 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 FAM26DQ5JW98 314 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 PPP4R3CPQ6ZMV5 832 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 NOSTRINQ8IVI9 506 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 CKAP2LQ8IYA6 745 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 DBF4BQ8NFT6 615 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 FAM20AQ96MK3 541 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 FAM161BQ96MY7 647 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 MTMR9Q96QG7 549 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 CEP89Q96ST8 783 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 PPP1R16BQ96T49 567 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 PBX4Q9BYU1 374 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 TTYH1Q9H313 450 aaPredicted RBP12.07□□□□□ -0.48
HMGA2-209ENST00000539662 FOXP1Q9H334 677 aaPredicted RBP12.07□□□□□ -0.48
HMGA2-209ENST00000539662 CDHR5Q9HBB8 845 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 RGL1Q9NZL6 768 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 YBX2Q9Y2T7 364 aaKnown RBP12.07□□□□□ -0.48
HMGA2-209ENST00000539662 PCDHA2Q9Y5H9 948 aa12.07□□□□□ -0.48
HMGA2-209ENST00000539662 RRN3P2A6NIE6 340 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 ARHGEF15O94989 841 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 OATP04181 439 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 GHRP10912 638 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 U2AF2P26368 475 aaKnown RBP eCLIP12.06□□□□□ -0.486e-8■■□□□ 13.3
HMGA2-209ENST00000539662 SFNP31947 248 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 TXKP42681 527 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 SLC26A2P50443 739 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 JAK3P52333 1124 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 MKRN4PQ13434 485 aaPredicted RBP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 DRP2Q13474 957 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 SAFBQ15424 915 aaKnown RBP eCLIP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 CALCRLQ16602 461 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 PLA2G4FQ68DD2 849 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 NCAPH2Q6IBW4 605 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 KIAA0319LQ8IZA0 1049 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 LRRC71Q8N4P6 559 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 C4orf32Q8N8J7 132 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 BBXQ8WY36 941 aaPredicted RBP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 DYDC2Q96IM9 177 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 ZNF668Q96K58 619 aaPredicted RBP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 AGO3Q9H9G7 860 aaKnown RBP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
HMGA2-209ENST00000539662 TCEAL9Q9UHQ7 104 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 SMC3Q9UQE7 1217 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 CDY2AQ9Y6F7 541 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 MICAL3Q7RTP6 2002 aa12.06□□□□□ -0.48
HMGA2-209ENST00000539662 CHD7Q9P2D1 2997 aa12.05□□□□□ -0.48
HMGA2-209ENST00000539662 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.05□□□□□ -0.48
HMGA2-209ENST00000539662 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.05□□□□□ -0.48
HMGA2-209ENST00000539662 POTEMA6NI47 508 aa12.05□□□□□ -0.48
HMGA2-209ENST00000539662 TBX3O15119 743 aa12.05□□□□□ -0.48
HMGA2-209ENST00000539662 NEMFO60524 1076 aa12.05□□□□□ -0.48
HMGA2-209ENST00000539662 PRKCSHP14314 528 aaPredicted RBP12.05□□□□□ -0.48
HMGA2-209ENST00000539662 CLCN3P51790 818 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms