RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ZBED1O96006 694 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 SLC4A1P02730 911 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 NR1D1P20393 614 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 BCAMP50895 628 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 DYNLT1P63172 113 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 ADCY2Q08462 1091 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 RBL2Q08999 1139 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 MYO1EQ12965 1108 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 ZNF658Q5TYW1 1059 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 OR6B2Q6IFH4 312 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 WDR75Q8IWA0 830 aaKnown RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 C7orf31Q8N865 590 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 ZBTB38Q8NAP3 1195 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 CENPKQ9BS16 269 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 A2ML1A8K2U0 1454 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 SOX5P35711 763 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 SLCO1A2P46721 670 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 TAF1BQ53T94 588 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 CNKSR1Q969H4 720 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 TBK1Q9UHD2 729 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 NOVA2Q9UNW9 492 aaKnown RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 MED1Q15648 1581 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 MYH15Q9Y2K3 1946 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 PYGLP06737 847 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 TAC1P20366 129 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 OCA2Q04671 838 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 CDC26Q8NHZ8 85 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 PYROXD1Q8WU10 500 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 RNF139Q8WU17 664 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 FAM96AQ9H5X1 160 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 PYCARDQ9ULZ3 195 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 G3BP2Q9UN86 482 aaKnown RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 RPAP1Q9BWH6 1393 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 SCNN1DP51172 638 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 MIS18BP1Q6P0N0 1132 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 NDUFAF2Q8N183 169 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 DCPSQ96C86 337 aaKnown RBP11.44□□□□□ -0.58
CLIP1-209ENST00000537178 CEP170P1Q96L14 293 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 LRFN2Q9ULH4 789 aa11.44□□□□□ -0.58
CLIP1-209ENST00000537178 ZMYND10O75800 440 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 LMNAP02545 664 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 CCNE1P24864 410 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 TMED1Q13445 227 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 CUL1Q13616 776 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 CDC37Q16543 378 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ARL13BQ3SXY8 428 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 CRLF3Q8IUI8 442 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 DCTN3O75935 186 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 SEC31AO94979 1220 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 EMBQ6PCB8 327 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 APOA5Q6Q788 366 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 SYT2Q8N9I0 419 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ZMYND12Q9H0C1 365 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 IRAK4Q9NWZ3 460 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 GCNT4Q9P109 453 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 NXF1Q9UBU9 619 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 FNDC3AQ9Y2H6 1198 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 CCDC188H7C350 402 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 SPAG7O75391 227 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 GFPT2O94808 682 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 FTCDO95954 541 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 SERPING1P05155 500 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 USP14P54578 494 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 PSMD2Q13200 908 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ENOX1Q8TC92 643 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 DEPDC1BQ8WUY9 529 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 LMTK3Q96Q04 1460 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ZSCAN20P17040 1043 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 PAPOLAP51003 745 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 DR1Q01658 176 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 YWHAHQ04917 246 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ALCAMQ13740 583 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 TBCCQ15814 346 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 ZBTB41Q5SVQ8 909 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 RNF207Q6ZRF8 634 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 FAM133AQ8N9E0 248 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 MAML1Q92585 1016 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 PALD1Q9ULE6 856 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 OVOS2A0A0J9YW53 1432 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 OVOS2Q6IE36 1432 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 HSPA4LO95757 839 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 EIF4A3P38919 411 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 MDM2Q00987 491 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 SCRN1Q12765 414 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 FAM98CQ17RN3 349 aaKnown RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 UBE2TQ9NPD8 197 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 TRPC5Q9UL62 973 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-209ENST00000537178 BCS1LQ9Y276 419 aa11.43□□□□□ -0.58
CLIP1-209ENST00000537178 FMNL1O95466 1100 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-209ENST00000537178 BAG6P46379 1132 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TEDDM1Q5T9Z0 273 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 NUGGCQ68CJ6 796 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TEX12Q9BXU0 123 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TRIM55Q9BYV6 548 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 NOP53Q9NZM5 478 aaKnown RBP11.42□□□□□ -0.58
CLIP1-209ENST00000537178 RWDD2AQ9UIY3 292 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TTLL1O95922 423 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 RWDD2BP57060 319 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 LRRC41Q15345 812 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 RHOT2Q8IXI1 618 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms