RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ATP7AQ04656 1500 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 GNAT1P11488 350 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 MAGEA10P43363 369 aaPredicted RBP5.81□□□□□ -1.48
CD44-235ENST00000532339 SURF1Q15526 300 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 NAALADL2Q58DX5 795 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 VASNQ6EMK4 673 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 TMC5Q6UXY8 1006 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 UHMK1Q8TAS1 419 aaKnown RBP5.81□□□□□ -1.48
CD44-235ENST00000532339 C8orf37Q96NL8 207 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 SPATA9Q9BWV2 254 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 FTSJ1Q9UET6 329 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 JAG2Q9Y219 1238 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 MSRB2Q9Y3D2 182 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 SCAF11Q99590 1463 aaKnown RBP5.81□□□□□ -1.48
CD44-235ENST00000532339 KIF14Q15058 1648 aa5.81□□□□□ -1.48
CD44-235ENST00000532339 ZNF536O15090 1300 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 BLACEA4D250 179 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 FAM47E-STBD1D6RA91 191 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 PDPK1O15530 556 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 SOD2P04179 222 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 MLLT6P55198 1093 aaPredicted RBP5.8□□□□□ -1.48
CD44-235ENST00000532339 GRIN1Q05586 938 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 TUSC3Q13454 348 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 YOD1Q5VVQ6 348 aaPredicted RBP5.8□□□□□ -1.48
CD44-235ENST00000532339 TTC9BQ8N6N2 239 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 CLEC4DQ8WXI8 215 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 SAMD11Q96NU1 681 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 GPR20Q99678 358 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 KCNJ15Q99712 375 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 ALG1Q9BT22 464 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 PDGFDQ9GZP0 370 aaPredicted RBP5.8□□□□□ -1.48
CD44-235ENST00000532339 DLL4Q9NR61 685 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 SMPD4Q9NXE4 827 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 PPP1R1BQ9UD71 204 aaPredicted RBP5.8□□□□□ -1.48
CD44-235ENST00000532339 TRPC5Q9UL62 973 aaPredicted RBP5.8□□□□□ -1.48
CD44-235ENST00000532339 NINLQ9Y2I6 1382 aa5.8□□□□□ -1.48
CD44-235ENST00000532339 MAP3K1Q13233 1512 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 ITSN2Q9NZM3 1697 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 COL6A2P12110 1019 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 FAHP16930 419 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 ZXDCQ2QGD7 858 aaPredicted RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 PAN2Q504Q3 1202 aaKnown RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 HABP4Q5JVS0 413 aaKnown RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 NBPF6Q5VWK0 638 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 TRMT10BQ6PF06 316 aaKnown RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 PROSER1Q86XN7 944 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 DTX3Q8N9I9 347 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 ZCCHC14Q8WYQ9 949 aaKnown RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 NBPF4Q96M43 638 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 DSEQ9UL01 958 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 WASF3Q9UPY6 502 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 RTEL1-TNFRSF6BF6WH68 1400 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 UGGT1Q9NYU2 1555 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 MSH6P52701 1360 aa5.79□□□□□ -1.48
CD44-235ENST00000532339 ZC3H13Q5T200 1668 aaKnown RBP5.79□□□□□ -1.48
CD44-235ENST00000532339 NUP153P49790 1475 aaKnown RBP5.78□□□□□ -1.48
CD44-235ENST00000532339 NLRP1Q9C000 1473 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 LAMTOR5O43504 91 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 B4GALT3O60512 393 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 ATP2B1P20020 1258 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 RASGRF1Q13972 1273 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 R3HDM1Q15032 1099 aaKnown RBP5.78□□□□□ -1.48
CD44-235ENST00000532339 MTERF2Q49AM1 385 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 GLB1LQ6UWU2 654 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 SPATC1Q76KD6 591 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.78□□□□□ -1.48
CD44-235ENST00000532339 GGNQ86UU5 652 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 SCUBE1Q8IWY4 988 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 KLHL36Q8N4N3 616 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 MBD6Q96DN6 1003 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 LOXL4Q96JB6 756 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 IPO9Q96P70 1041 aaKnown RBP5.78□□□□□ -1.48
CD44-235ENST00000532339 CDC6Q99741 560 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 CCDC113Q9H0I3 377 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 BARX1Q9HBU1 254 aaPredicted RBP5.78□□□□□ -1.48
CD44-235ENST00000532339 RBPJLQ9UBG7 517 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 ABCC3O15438 1527 aa5.78□□□□□ -1.48
CD44-235ENST00000532339 AHDC1Q5TGY3 1603 aaPredicted RBP5.77□□□□□ -1.48
CD44-235ENST00000532339 AQP7O14520 342 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 NKRFO15226 690 aaKnown RBP eCLIP5.77□□□□□ -1.49
CD44-235ENST00000532339 LTFP02788 710 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 CHGBP05060 677 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 ENO2P09104 434 aaPredicted RBP5.77□□□□□ -1.49
CD44-235ENST00000532339 EPHA5P54756 1037 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 ADAM17P78536 824 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 PKN3Q6P5Z2 889 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 KCTD1Q719H9 257 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 MAMDC2Q7Z304 686 aaPredicted RBP5.77□□□□□ -1.49
CD44-235ENST00000532339 RBM12BQ8IXT5 1001 aaKnown RBP5.77□□□□□ -1.49
CD44-235ENST00000532339 TANGO6Q9C0B7 1094 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 IPPKQ9H8X2 491 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 MYRFQ9Y2G1 1151 aa5.77□□□□□ -1.49
CD44-235ENST00000532339 TRBV23-1A0A0A0MS06 115 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 ADCY3O60266 1144 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 FBXO21O94952 628 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 CKMP06732 381 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 COL6A1P12109 1028 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 INSRRP14616 1297 aa5.76□□□□□ -1.49
CD44-235ENST00000532339 SUMO1P63165 101 aaKnown RBP5.76□□□□□ -1.49
CD44-235ENST00000532339 SSRP1Q08945 709 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms