RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PDHBP11177 359 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 UBA1P22314 1058 aaKnown RBP9.62□□□□□ -0.87
CD44-232ENST00000531118 ZNF543Q08ER8 600 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 ANGPT1Q15389 498 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 PAN2Q504Q3 1202 aaKnown RBP9.62□□□□□ -0.87
CD44-232ENST00000531118 MYSM1Q5VVJ2 828 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 ANKRD54Q6NXT1 300 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 PARP9Q8IXQ6 854 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 NLRP7Q8WX94 980 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 RMDN3Q96TC7 470 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 S1PR5Q9H228 398 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 DLL3Q9NYJ7 618 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 NR2E1Q9Y466 385 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 LAMA4Q16363 1823 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 PATL2C9JE40 543 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 PER2O15055 1255 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 RANBP6O60518 1105 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 RAB11FIP3O75154 756 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 PPFIA4O75335 1185 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 LMNAP02545 664 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 ZFYP08048 801 aaPredicted RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 TOP1P11387 765 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 AOC1P19801 751 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 TECP42680 631 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 CLCN5P51795 746 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 CTDSPL2Q05D32 466 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 MGAT3Q09327 533 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 MMRN1Q13201 1228 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 LPIN1Q14693 890 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 CDC37Q16543 378 aaPredicted RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 CELF3Q5SZQ8 465 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 SYCE2Q6PIF2 218 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 FLCNQ8NFG4 579 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 KCNG4Q8TDN1 519 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 LMBR1Q8WVP7 490 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 TBC1D5Q92609 795 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 TMEM47Q9BQJ4 181 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 APOL5Q9BWW9 433 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 MAF1Q9H063 256 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 RNPEPQ9H4A4 650 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 EHMT1Q9H9B1 1298 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 PXMP2Q9NR77 195 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 CDH22Q9UJ99 828 aa9.61□□□□□ -0.87
CD44-232ENST00000531118 TSR3Q9UJK0 312 aaKnown RBP9.61□□□□□ -0.87
CD44-232ENST00000531118 H3BRB1 525 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ENPP3O14638 875 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 FSCN2O14926 492 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 FOXP2O15409 715 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ORC4O43929 436 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 RNF40O75150 1001 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 HMMRO75330 724 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 EIF3JO75822 258 aaKnown RBP9.6□□□□□ -0.87
CD44-232ENST00000531118 CHRNA1P02708 482 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ASGR2P07307 311 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 NR3C2P08235 984 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 SNHG28P0DPA3 235 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ARP10275 920 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 UBE3AQ05086 875 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 KCNC3Q14003 757 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ST3GAL2Q16842 350 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 ARHGEF16Q5VV41 709 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 TRIM50Q86XT4 487 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 NPAS4Q8IUM7 802 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 POMKQ9H5K3 350 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 TUT1Q9H6E5 874 aaKnown RBP9.6□□□□□ -0.87
CD44-232ENST00000531118 SETD4Q9NVD3 440 aa9.6□□□□□ -0.87
CD44-232ENST00000531118 SUPT16HQ9Y5B9 1047 aaKnown RBP9.6□□□□□ -0.87
CD44-232ENST00000531118 C2orf16Q68DN1 1984 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 GATMP50440 423 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 ADAM17P78536 824 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 ARHGAP4P98171 946 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 FBXO47Q5MNV8 452 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 PLPP4Q5VZY2 271 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 LLGL2Q6P1M3 1020 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 TMEM184AQ6ZMB5 413 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 RUFY4Q6ZNE9 571 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 TSHZ1Q6ZSZ6 1077 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 NYAP1Q6ZVC0 841 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 SIRT2Q8IXJ6 389 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 CRIPAKQ8N1N5 446 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 TDRD5Q8NAT2 981 aaKnown RBP9.59□□□□□ -0.87
CD44-232ENST00000531118 CYP2W1Q8TAV3 490 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 GPKOWQ92917 476 aaPredicted RBP eCLIP9.59□□□□□ -0.87
CD44-232ENST00000531118 SEC62Q99442 399 aaKnown RBP9.59□□□□□ -0.87
CD44-232ENST00000531118 HINFPQ9BQA5 517 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 PDCD2LQ9BRP1 358 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 CPVLQ9H3G5 476 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 SEMA4AQ9H3S1 761 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 FAM217BQ9NTX9 383 aaPredicted RBP9.59□□□□□ -0.87
CD44-232ENST00000531118 R4GN57 208 aa9.59□□□□□ -0.87
CD44-232ENST00000531118 FASNP49327 2511 aaKnown RBP9.58□□□□□ -0.88
CD44-232ENST00000531118 CACNA1IQ9P0X4 2223 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 GNAT1P11488 350 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 NPR3P17342 541 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 RSPO4Q2I0M5 234 aaPredicted RBP9.58□□□□□ -0.88
CD44-232ENST00000531118 TSHZ3Q63HK5 1081 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 KCNV1Q6PIU1 500 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 MCF2L2Q86YR7 1114 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 DTWD2Q8NBA8 298 aa9.58□□□□□ -0.88
CD44-232ENST00000531118 IL31RAQ8NI17 732 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms