RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 STAG3L1P0CL83 205 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 HOXA13P31271 388 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-203ENST00000527916 ADAM17P78536 824 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 UTP14CQ5TAP6 766 aaKnown RBP12.08□□□□□ -0.48
CPSF1-203ENST00000527916 NFXL1Q6ZNB6 911 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 TSHZ1Q6ZSZ6 1077 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 CYFIP1Q7L576 1253 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 ASCL5Q7RTU5 278 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 NPAS4Q8IUM7 802 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 IL31RAQ8NI17 732 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 SUSD6Q92537 303 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 NEK1Q96PY6 1258 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 CDCA3Q99618 268 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-203ENST00000527916 GPR20Q99678 358 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 EP300Q09472 2414 aaPredicted RBP12.08□□□□□ -0.48
CPSF1-203ENST00000527916 FRMPD4Q14CM0 1322 aa12.08□□□□□ -0.48
CPSF1-203ENST00000527916 ZNF292O60281 2723 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 PRR23AA6NEV1 266 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 CDC45O75419 566 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 NBL1P41271 181 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 ID4P47928 161 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 PLXNA3P51805 1871 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 CACNA1BQ00975 2339 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 EXOSC10Q01780 885 aaKnown RBP12.07□□□□□ -0.48
CPSF1-203ENST00000527916 UBE3AQ05086 875 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 FBXO47Q5MNV8 452 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 FCHSD1Q86WN1 690 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 TRIM50Q86XT4 487 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 UBALD2Q8IYN6 164 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 SRBD1Q8N5C6 995 aaKnown RBP12.07□□□□□ -0.48
CPSF1-203ENST00000527916 FANCBQ8NB91 859 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 GPKOWQ92917 476 aaPredicted RBP eCLIP12.07□□□□□ -0.48
CPSF1-203ENST00000527916 MYL10Q9BUA6 226 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 AAASQ9NRG9 546 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 SEC63Q9UGP8 760 aaKnown RBP12.07□□□□□ -0.48
CPSF1-203ENST00000527916 PCDHB12Q9Y5F1 795 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 SLC12A7Q9Y666 1083 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 MYO10Q9HD67 2058 aa12.07□□□□□ -0.48
CPSF1-203ENST00000527916 DMXL1Q9Y485 3027 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 SPATA31C2B4DYI2 1134 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 FIBPO43427 364 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 PPFIA3O75145 1194 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 MGAT3Q09327 533 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 PPFIA1Q13136 1202 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 COL9A3Q14050 684 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 KRT32Q14532 448 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 PAN2Q504Q3 1202 aaKnown RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 MCTP2Q6DN12 878 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 PDE12Q6L8Q7 609 aaKnown RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 XRRA1Q6P2D8 792 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 DHX32Q7L7V1 743 aaKnown RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 SKAP1Q86WV1 359 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 TEX2Q8IWB9 1127 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 GIMAP8Q8ND71 665 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 ATP8B4Q8TF62 1192 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 NKD2Q969F2 451 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 CCDC136Q96JN2 1154 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 ZFP91Q96JP5 570 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 BCAS3Q9H6U6 928 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 RNF216Q9NWF9 866 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-203ENST00000527916 TUBE1Q9UJT0 475 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 LRFN2Q9ULH4 789 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 NR2E1Q9Y466 385 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 SQORQ9Y6N5 450 aa12.06□□□□□ -0.48
CPSF1-203ENST00000527916 M0QZ92 97 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 MEIS2O14770 477 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 PER2O15055 1255 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 PLEKHA8P1O95397 391 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 HMGB1P09429 215 aaKnown RBP12.05□□□□□ -0.48
CPSF1-203ENST00000527916 MRPS9P82933 396 aaKnown RBP12.05□□□□□ -0.48
CPSF1-203ENST00000527916 SP4Q02446 784 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 MTMR3Q13615 1198 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 SPOUT1Q5T280 376 aaKnown RBP12.05□□□□□ -0.48
CPSF1-203ENST00000527916 IER5Q5VY09 327 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 SYNE3Q6ZMZ3 975 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 RUFY4Q6ZNE9 571 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 KREMEN2Q8NCW0 462 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 DNAJB3Q8WWF6 145 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 KCNB2Q92953 911 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 CUL5Q93034 780 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 INPP4AQ96PE3 977 aaPredicted RBP12.05□□□□□ -0.48
CPSF1-203ENST00000527916 SENP7Q9BQF6 1050 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 RBM28Q9NW13 759 aaKnown RBP12.05□□□□□ -0.48
CPSF1-203ENST00000527916 CDY2AQ9Y6F7 541 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 FRYLO94915 3013 aa12.05□□□□□ -0.48
CPSF1-203ENST00000527916 PDGFBP01127 241 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 SCG2P13521 617 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 HOXB8P17481 243 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 CD52P31358 61 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 RCAN1P53805 252 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 MRPS6P82932 125 aaKnown RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 GRIK4Q16099 956 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 DUSP6Q16828 381 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 PCNX4Q63HM2 1172 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 APOA5Q6Q788 366 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 FAM43BQ6ZT52 329 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 TMTC3Q6ZXV5 915 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 CRIPAKQ8N1N5 446 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 SMARCC2Q8TAQ2 1214 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms