RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MGAT3Q09327 533 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 LRCH2Q5VUJ6 765 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 NME8Q8N427 588 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 NECAB1Q8N987 351 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 ZBED2Q9BTP6 218 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 CEP131Q9UPN4 1083 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 LIMCH1Q9UPQ0 1083 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 SAMM50Q9Y512 469 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 SQORQ9Y6N5 450 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 KAT6AQ92794 2004 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 IGSF9BQ9UPX0 1349 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 GJB5O95377 273 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 LARGE1O95461 756 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 CA3P07451 260 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 DEFB103AP81534 67 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 MRPS6P82932 125 aaKnown RBP23.3■■□□□ 1.32
VPS28-206ENST00000526734 MKRN4PQ13434 485 aaPredicted RBP23.3■■□□□ 1.32
VPS28-206ENST00000526734 NEK8Q86SG6 692 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 CKAP2LQ8IYA6 745 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 USP38Q8NB14 1042 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 NSUN7Q8NE18 718 aaKnown RBP23.3■■□□□ 1.32
VPS28-206ENST00000526734 MAFAQ8NHW3 353 aaPredicted RBP23.3■■□□□ 1.32
VPS28-206ENST00000526734 DNAJB3Q8WWF6 145 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 IFIH1Q9BYX4 1025 aaKnown RBP23.3■■□□□ 1.32
VPS28-206ENST00000526734 DISC1Q9NRI5 854 aa23.3■■□□□ 1.32
VPS28-206ENST00000526734 TDP2O95551 362 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 CHRNA1P02708 482 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 FDPSP14324 419 aaKnown RBP23.29■■□□□ 1.32
VPS28-206ENST00000526734 TRIM29Q14134 588 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 INF2Q27J81 1249 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 TCTN1Q2MV58 587 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 PPP4R3AQ6IN85 833 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 MTHFD1LQ6UB35 978 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 ZSCAN31Q96LW9 406 aaPredicted RBP23.29■■□□□ 1.32
VPS28-206ENST00000526734 RAD9AQ99638 391 aa23.29■■□□□ 1.32
VPS28-206ENST00000526734 DDX25Q9UHL0 483 aaKnown RBP23.29■■□□□ 1.32
VPS28-206ENST00000526734 PSMD10O75832 226 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 MYOGP15173 224 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 KRT2P35908 639 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 RBM25P49756 843 aaKnown RBP23.28■■□□□ 1.32
VPS28-206ENST00000526734 TSHZ1Q6ZSZ6 1077 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 FAM49AQ9H0Q0 323 aaPredicted RBP23.28■■□□□ 1.32
VPS28-206ENST00000526734 PRDM12Q9H4Q4 367 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 GABBR1Q9UBS5 961 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 TRPV2Q9Y5S1 764 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 CDY2AQ9Y6F7 541 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 KDM3AQ9Y4C1 1321 aa23.28■■□□□ 1.32
VPS28-206ENST00000526734 GHRP10912 638 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 KLRC1P26715 233 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 LETM2Q2VYF4 491 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 FBXO47Q5MNV8 452 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 SLC17A8Q8NDX2 589 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 ETNPPLQ8TBG4 499 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 TRAPPC12Q8WVT3 735 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 FAM20AQ96MK3 541 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 UIMC1Q96RL1 719 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 LLPHQ9BRT6 129 aaKnown RBP23.27■■□□□ 1.32
VPS28-206ENST00000526734 UPF2Q9HAU5 1272 aaKnown RBP23.27■■□□□ 1.32
VPS28-206ENST00000526734 SH2B1Q9NRF2 756 aaPredicted RBP23.27■■□□□ 1.32
VPS28-206ENST00000526734 GBF1Q92538 1859 aa23.27■■□□□ 1.32
VPS28-206ENST00000526734 TBX3O15119 743 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 ATP4AP20648 1035 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 LPIN1Q14693 890 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 PIK3AP1Q6ZUJ8 805 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 ZNF710Q8N1W2 664 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 UNC45AQ9H3U1 944 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 NRBP2Q9NSY0 501 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 INSL6Q9Y581 213 aa23.26■■□□□ 1.31
VPS28-206ENST00000526734 MAGEB2O15479 319 aa23.25■■□□□ 1.31
VPS28-206ENST00000526734 TAP1Q03518 808 aa23.25■■□□□ 1.31
VPS28-206ENST00000526734 B3GNT9Q6UX72 402 aa23.25■■□□□ 1.31
VPS28-206ENST00000526734 MIER3Q7Z3K6 550 aa23.25■■□□□ 1.31
VPS28-206ENST00000526734 MYOCDQ8IZQ8 938 aa23.25■■□□□ 1.31
VPS28-206ENST00000526734 CELF4Q9BZC1 486 aaKnown RBP23.25■■□□□ 1.31
VPS28-206ENST00000526734 ZBTB42B2RXF5 422 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 CHMP2AO43633 222 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 MMP1P03956 469 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 OATP04181 439 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 ODR4Q5SWX8 454 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS28-206ENST00000526734 OXER1Q8TDS5 423 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 KIF2CQ99661 725 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 FTHL17Q9BXU8 183 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 KCNMB3Q9NPA1 279 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 GJB4Q9NTQ9 266 aa23.24■■□□□ 1.31
VPS28-206ENST00000526734 JAK2O60674 1132 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 C22orf31O95567 290 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 HMGN5P82970 282 aaKnown RBP23.23■■□□□ 1.31
VPS28-206ENST00000526734 HTRA4P83105 476 aaPredicted RBP23.23■■□□□ 1.31
VPS28-206ENST00000526734 PRKCEQ02156 737 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 RABEP1Q15276 862 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 TNFRSF25Q93038 417 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 TOP1MTQ969P6 601 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 ZBTB10Q96DT7 871 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 MICAL3Q7RTP6 2002 aa23.23■■□□□ 1.31
VPS28-206ENST00000526734 COL4A6Q14031 1691 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.22■■□□□ 1.31
VPS28-206ENST00000526734 SLC37A4O43826 429 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 CCNT1O60563 726 aaKnown RBP23.22■■□□□ 1.31
VPS28-206ENST00000526734 DKC1O60832 514 aaKnown RBP eCLIP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms