RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 PLAGL2Q9UPG8 496 aa12.56□□□□□ -0.4
NEDD8-204ENST00000526430 FNDC1Q4ZHG4 1894 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 FSD2A1L4K1 749 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 PFKFB2O60825 505 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 CTDNEP1O95476 244 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 CALM1P0DP23 149 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 CALM2P0DP24 149 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 CALM3P0DP25 149 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 THPOP40225 353 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 RPS6P62753 249 aaKnown RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 CCT2P78371 535 aaKnown RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 ZNF200P98182 395 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 SCRN1Q12765 414 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 RABEP1Q15276 862 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 ASTLQ6HA08 431 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 PPTC7Q8NI37 304 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 ALG1Q9BT22 464 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 VAT1LQ9HCJ6 419 aa12.55□□□□□ -0.4
NEDD8-204ENST00000526430 BARX2Q9UMQ3 279 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-204ENST00000526430 RBAK-RBAKDNI3L0D1 243 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 HOXC8P31273 242 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 HIC1Q14526 733 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 RTN1Q16799 776 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 LY6KQ17RY6 165 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 QRICH1Q2TAL8 776 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 ADGRD2Q7Z7M1 963 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 DHX37Q8IY37 1157 aaKnown RBP12.54□□□□□ -0.4
NEDD8-204ENST00000526430 NECAB1Q8N987 351 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 ZNF689Q96CS4 500 aaPredicted RBP12.54□□□□□ -0.4
NEDD8-204ENST00000526430 PIGSQ96S52 555 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 SPZ1Q9BXG8 430 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 MAF1Q9H063 256 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 SEMA4AQ9H3S1 761 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 FAM208BQ5VWN6 2430 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 DOCK5Q9H7D0 1870 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 PKD1L2Q7Z442 2459 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 CNTNAP5Q8WYK1 1306 aa12.54□□□□□ -0.4
NEDD8-204ENST00000526430 DENND4AQ7Z401 1863 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 GOLGA8AA7E2F4 631 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 GOLGA8BA8MQT2 603 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 OPLAHO14841 1288 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 PPFIA3O75145 1194 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 ZNF286BP0CG31 522 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 DNAJB1P25685 340 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 NRIP1P48552 1158 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 METAP2P50579 478 aaKnown RBP eCLIP12.53□□□□□ -0.4
NEDD8-204ENST00000526430 CLCN5P51795 746 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 FGD1P98174 961 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 MTMR3Q13615 1198 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 ZBTB33Q86T24 672 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 CCDC82Q8N4S0 544 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 CTCFLQ8NI51 663 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-204ENST00000526430 ATP8B4Q8TF62 1192 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 DLL3Q9NYJ7 618 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 SORCS3Q9UPU3 1222 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 PCDHGC5Q9Y5F6 944 aa12.53□□□□□ -0.4
NEDD8-204ENST00000526430 hCG_1642624A0A1W2PR95 340 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 ADAMTS3O15072 1205 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 ITGB1P05556 798 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 FDPSP14324 419 aaKnown RBP12.52□□□□□ -0.41
NEDD8-204ENST00000526430 KIF5BP33176 963 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 STK3Q13188 491 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 LAMC2Q13753 1193 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 ANKRD1Q15327 319 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 CDC37Q16543 378 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-204ENST00000526430 TYW1BQ6NUM6 668 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 SYNE3Q6ZMZ3 975 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 KREMEN2Q8NCW0 462 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 RGS22Q8NE09 1264 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 SPPL3Q8TCT6 385 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 TBC1D5Q92609 795 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 LZTS2Q9BRK4 669 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 RBM28Q9NW13 759 aaKnown RBP12.52□□□□□ -0.41
NEDD8-204ENST00000526430 LIMCH1Q9UPQ0 1083 aa12.52□□□□□ -0.41
NEDD8-204ENST00000526430 V9GY48 417 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-204ENST00000526430 PNMA6FA0A0J9YX94 578 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 ZBTB5O15062 677 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 PRPF3O43395 683 aaKnown RBP12.51□□□□□ -0.41
NEDD8-204ENST00000526430 PPFIA4O75335 1185 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 IFNAR1P17181 557 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 GNAQP50148 359 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 BTG3Q14201 252 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-204ENST00000526430 SEPT14Q6ZU15 432 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 ATP6V0A1Q93050 837 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 PHKBQ93100 1093 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 CDCA3Q99618 268 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-204ENST00000526430 OSBPL7Q9BZF2 842 aa12.51□□□□□ -0.41
NEDD8-204ENST00000526430 DDX41Q9UJV9 622 aaKnown RBP12.51□□□□□ -0.41
NEDD8-204ENST00000526430 DGKIO75912 1065 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 CSPG5O95196 566 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 BRD1O95696 1058 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 LMNAP02545 664 aaKnown RBP12.5□□□□□ -0.41
NEDD8-204ENST00000526430 STXBP2Q15833 593 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 FAM26DQ5JW98 314 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 TMEM184AQ6ZMB5 413 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 NSUN7Q8NE18 718 aaKnown RBP12.5□□□□□ -0.41
NEDD8-204ENST00000526430 PIBF1Q8WXW3 757 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 GTF3C6Q969F1 213 aa12.5□□□□□ -0.41
NEDD8-204ENST00000526430 TMX3Q96JJ7 454 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms