RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SLC26A6Q9BXS9 759 aa9.14□□□□□ -0.95
CSMD1-213ENST00000523488 ZDHHC7Q9NXF8 308 aa9.14□□□□□ -0.95
CSMD1-213ENST00000523488 SMARCAL1Q9NZC9 954 aa9.14□□□□□ -0.95
CSMD1-213ENST00000523488 TBX22Q9Y458 520 aa9.14□□□□□ -0.95
CSMD1-213ENST00000523488 ATP2A2P16615 1042 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 POLE2P56282 527 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 MGAT5Q09328 741 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 LSAMPQ13449 338 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 GIGYF2Q6Y7W6 1299 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 C3orf62Q6ZUJ4 267 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ERICH1Q86X53 443 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CNBD1Q8NA66 436 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 HES6Q96HZ4 224 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 RBM17Q96I25 401 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 PUS7LQ9H0K6 701 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 DDX25Q9UHL0 483 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 LGALS13Q9UHV8 139 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 COL5A3P25940 1745 aaPredicted RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 KAT6BQ8WYB5 2073 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 MEGF6O75095 1541 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 EYA2O00167 538 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ZBTB43O43298 467 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 TLR2O60603 784 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 KRT16P08779 473 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 PYGBP11216 843 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CCNE1P24864 410 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CASP1P29466 404 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 PRKCIP41743 596 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 SSRP1Q08945 709 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ADRM1Q16186 407 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CNGA2Q16280 664 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CYP1B1Q16678 543 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ZDHHC24Q6UX98 284 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 PLBD2Q8NHP8 589 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 EPSTI1Q96J88 318 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 SH3GLB2Q9NR46 395 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 DNAJB4Q9UDY4 337 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 NOVA2Q9UNW9 492 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 MAPK8IP1Q9UQF2 711 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 SSX2IPQ9Y2D8 614 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ACTL7BQ9Y614 415 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 DCDC2CA8MYV0 355 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 TP73O15350 636 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ATP5HO75947 161 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ALDH2P05091 517 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 PYGLP06737 847 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 MSH2P43246 934 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 RNASE9P60153 205 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ENOX2Q16206 610 aaKnown RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 USP41Q3LFD5 358 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 THEMISQ8N1K5 641 aaPredicted RBP9.13□□□□□ -0.95
CSMD1-213ENST00000523488 KIFAP3Q92845 792 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 CNNM2Q9H8M5 875 aa9.13□□□□□ -0.95
CSMD1-213ENST00000523488 ROBO3Q96MS0 1386 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 BAZ2AQ9UIF9 1905 aaKnown RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 ZNF213O14771 459 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 UNC5CO95185 931 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 IL1BP01584 269 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 CCDC166P0CW27 439 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 CUL3Q13618 768 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 CCDC152Q4G0S7 254 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 C1orf141Q5JVX7 400 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 HHATQ5VTY9 493 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 TBC1D9BQ66K14 1250 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 LRRC55Q6ZSA7 311 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 NELFCDQ8IXH7 590 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 KCNV2Q8TDN2 545 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 TEKT4Q8WW24 435 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 NR1H4Q96RI1 486 aaPredicted RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 SELENOSQ9BQE4 189 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 TRPV5Q9NQA5 729 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 EHD2Q9NZN4 543 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 ATXN10Q9UBB4 475 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 SEC63Q9UGP8 760 aaKnown RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 RPTORQ8N122 1335 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 GOLGA8AA7E2F4 631 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 LAD1O00515 517 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 CTNND1O60716 968 aaKnown RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 HIP1RO75146 1068 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 GM2AP17900 193 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 YARSP54577 528 aaKnown RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 KCNJ2P63252 427 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 KRT71Q3SY84 523 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 TRIM22Q8IYM9 498 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 CCDC82Q8N4S0 544 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 PHC3Q8NDX5 983 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 STK32AQ8WU08 396 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 IFIH1Q9BYX4 1025 aaKnown RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 ROPN1BQ9BZX4 212 aaPredicted RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 MLXIPQ9HAP2 919 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 ROPN1Q9HAT0 212 aaPredicted RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 VPS54Q9P1Q0 977 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 SUCLA2Q9P2R7 463 aaPredicted RBP9.12□□□□□ -0.95
CSMD1-213ENST00000523488 FRMPD4Q14CM0 1322 aa9.12□□□□□ -0.95
CSMD1-213ENST00000523488 SMAPO00193 183 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 SLC26A4O43511 780 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 MOCS3O95396 460 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 PEX5P50542 639 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 MOGSQ13724 837 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 CTC1Q2NKJ3 1217 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms