RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 B4GALNT3Q6L9W6 998 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 NLRX1Q86UT6 975 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 TMEM105Q8N8V8 129 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 MTMR8Q96EF0 704 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 MFSD1Q9H3U5 465 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 DIAPH3Q9NSV4 1193 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 ERAP1Q9NZ08 941 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 TRPV2Q9Y5S1 764 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 PNMA6FA0A0J9YX94 578 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 GSTTP1A0A1W2PQM5 241 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 PALM3A6NDB9 673 aaPredicted RBP13.39□□□□□ -0.27
SDCBP-211ENST00000523441 BRD1O95696 1058 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 ASGR2P07307 311 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 INSRRP14616 1297 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 ID4P47928 161 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 DUSP6Q16828 381 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 ANKRD54Q6NXT1 300 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 ADSSL1Q8N142 457 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 SUSD6Q92537 303 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 CUL5Q93034 780 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 FTHL17Q9BXU8 183 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 SENP2Q9HC62 589 aa13.39□□□□□ -0.27
SDCBP-211ENST00000523441 DENND3A2RUS2 1198 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 CYTH3O43739 400 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 STAM2O75886 525 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 SRGAP2BP0DMP2 458 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 ATF7P17544 494 aaPredicted RBP13.38□□□□□ -0.27
SDCBP-211ENST00000523441 PBX3P40426 434 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 GRM4Q14833 912 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 COLGALT1Q8NBJ5 622 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 FLCNQ8NFG4 579 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 ATP8B4Q8TF62 1192 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 SEPT1Q8WYJ6 367 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 TCF25Q9BQ70 676 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 TMX1Q9H3N1 280 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 AAASQ9NRG9 546 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 EVPLQ92817 2033 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 WDR87Q6ZQQ6 2873 aa13.38□□□□□ -0.27
SDCBP-211ENST00000523441 DMDP11532 3685 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 CACNA1AO00555 2505 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 HIDE1A8MVS5 230 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 C2CD4DB7Z1M9 353 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 IFIT3O14879 490 aaKnown RBP13.37□□□□□ -0.27
SDCBP-211ENST00000523441 MGEA5O60502 916 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 FGFR1P11362 822 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 TRAF1Q13077 416 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 MTMR3Q13615 1198 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 SEC23AQ15436 765 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 PCNX4Q63HM2 1172 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 SYCE2Q6PIF2 218 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 SAMD3Q8N6K7 520 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 NKD2Q969F2 451 aaPredicted RBP13.37□□□□□ -0.27
SDCBP-211ENST00000523441 CELF4Q9BZC1 486 aaKnown RBP13.37□□□□□ -0.27
SDCBP-211ENST00000523441 S1PR5Q9H228 398 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 SMARCAD1Q9H4L7 1026 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 RIOX1Q9H6W3 641 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 CNNM2Q9H8M5 875 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 TYW1Q9NV66 732 aaKnown RBP13.37□□□□□ -0.27
SDCBP-211ENST00000523441 NR2E1Q9Y466 385 aa13.37□□□□□ -0.27
SDCBP-211ENST00000523441 RIF1Q5UIP0 2472 aaKnown RBP13.37□□□□□ -0.27
SDCBP-211ENST00000523441 MBLAC1A4D2B0 266 aaPredicted RBP13.36□□□□□ -0.27
SDCBP-211ENST00000523441 KCNA2P16389 499 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 SARSP49591 514 aaKnown RBP13.36□□□□□ -0.27
SDCBP-211ENST00000523441 KRT76Q01546 638 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 PLCB4Q15147 1175 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 UBE2SQ16763 222 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 KANK3Q6NY19 840 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 TRMT1LQ7Z2T5 733 aaKnown RBP13.36□□□□□ -0.27
SDCBP-211ENST00000523441 TMC7Q7Z402 723 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 CRIPAKQ8N1N5 446 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 GIMAP8Q8ND71 665 aaPredicted RBP13.36□□□□□ -0.27
SDCBP-211ENST00000523441 KCNG4Q8TDN1 519 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 ADAM2Q99965 735 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 POMKQ9H5K3 350 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 AZI2Q9H6S1 392 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 CDHR5Q9HBB8 845 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 SORCS3Q9UPU3 1222 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 FAM186AA6NE01 2351 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 VPS13AQ96RL7 3174 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 FRMPD4Q14CM0 1322 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 IGSF9BQ9UPX0 1349 aa13.36□□□□□ -0.27
SDCBP-211ENST00000523441 ERICH2A1L162 156 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 RRN3P2A6NIE6 340 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 RPS6KA5O75582 802 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 ARP10275 920 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 NBL1P41271 181 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 TRDNQ13061 729 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 MTMR1Q13613 665 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 RARS2Q5T160 578 aaKnown RBP13.35□□□□□ -0.27
SDCBP-211ENST00000523441 C12orf76Q8N812 135 aaPredicted RBP13.35□□□□□ -0.27
SDCBP-211ENST00000523441 RNF169Q8NCN4 708 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 CDCA3Q99618 268 aaPredicted RBP13.35□□□□□ -0.27
SDCBP-211ENST00000523441 SENP7Q9BQF6 1050 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 MYL10Q9BUA6 226 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 LIMD1Q9UGP4 676 aa13.35□□□□□ -0.27
SDCBP-211ENST00000523441 NOC2LQ9Y3T9 749 aaKnown RBP13.35□□□□□ -0.27
SDCBP-211ENST00000523441 hCG_1642624A0A1W2PR95 340 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 PROB1E7EW31 1015 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 DDX39AO00148 427 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms