RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 HAS1Q92839 578 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 ATP6V0A1Q93050 837 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 GJA10Q969M2 543 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 NOC4LQ9BVI4 516 aaKnown RBP9.36□□□□□ -0.91
CCL28-204ENST00000514421 PPP1R12CQ9BZL4 782 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 UBE2OQ9C0C9 1292 aaKnown RBP9.36□□□□□ -0.91
CCL28-204ENST00000514421 PRO3102Q9H379 93 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 HIPK3Q9H422 1215 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 GRPEL1Q9HAV7 217 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 GDPD2Q9HCC8 539 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 NRBP2Q9NSY0 501 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 SETD4Q9NVD3 440 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 NOL7Q9UMY1 257 aaKnown RBP9.36□□□□□ -0.91
CCL28-204ENST00000514421 COLQQ9Y215 455 aaPredicted RBP9.36□□□□□ -0.91
CCL28-204ENST00000514421 SAMM50Q9Y512 469 aa9.36□□□□□ -0.91
CCL28-204ENST00000514421 MAFBQ9Y5Q3 323 aaPredicted RBP9.36□□□□□ -0.91
CCL28-204ENST00000514421 MYH7BA7E2Y1 1941 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 POTEB3A0JP26 581 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 LRRC37A2A6NM11 1700 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 KIF28PB7ZC32 967 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 HBP1O60381 514 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 ATXN8OSP0DMR3 200 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 INSRRP14616 1297 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 MARK3P27448 753 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 CYP2C18P33260 490 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 CCL23P55773 120 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 PPFIA1Q13136 1202 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 ORC2Q13416 577 aaPredicted RBP9.35□□□□□ -0.91
CCL28-204ENST00000514421 HIC1Q14526 733 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 PLCB4Q15147 1175 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 ZNF174Q15697 407 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 CCDC183Q5T5S1 534 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 PDXDC2PQ6P474 469 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 POTEBQ6S5H4 581 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 MIER3Q7Z3K6 550 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 FERMT3Q86UX7 667 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 RPUSD2Q8IZ73 545 aaKnown RBP9.35□□□□□ -0.91
CCL28-204ENST00000514421 CCDC155Q8N6L0 562 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 CAGE1Q8TC20 777 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 ZNF396Q96N95 335 aaPredicted RBP9.35□□□□□ -0.91
CCL28-204ENST00000514421 CTAGE1Q96RT6 745 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 UNC45AQ9H3U1 944 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 GABBR1Q9UBS5 961 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 PCDHA12Q9UN75 941 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 MORC2Q9Y6X9 1032 aaPredicted RBP9.35□□□□□ -0.91
CCL28-204ENST00000514421 SCN10AQ9Y5Y9 1956 aa9.35□□□□□ -0.91
CCL28-204ENST00000514421 TRIOBPQ9H2D6 2365 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 A0A1W2PPC1 479 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 TREHO43280 583 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 CHMP2AO43633 222 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 NEMFO60524 1076 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 PARNO95453 639 aaKnown RBP9.34□□□□□ -0.91
CCL28-204ENST00000514421 PRR29P0C7W0 189 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 ATP4AP20648 1035 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 TXKP42681 527 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 NASPP49321 788 aaPredicted RBP9.34□□□□□ -0.91
CCL28-204ENST00000514421 ADAM17P78536 824 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 FPGSQ05932 587 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 PPP2R5CQ13362 524 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 PPIGQ13427 754 aaKnown RBP eCLIP9.34□□□□□ -0.91
CCL28-204ENST00000514421 EPHA7Q15375 998 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 GRIK4Q16099 956 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 CALCRLQ16602 461 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 ZNF484Q5JVG2 852 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 TTC38Q5R3I4 469 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 FAM173BQ6P4H8 233 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 RBM43Q6ZSC3 357 aaKnown RBP9.34□□□□□ -0.91
CCL28-204ENST00000514421 SERINC5Q86VE9 423 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 CCDC60Q8IWA6 550 aaPredicted RBP9.34□□□□□ -0.91
CCL28-204ENST00000514421 CKAP2LQ8IYA6 745 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 ATP8B4Q8TF62 1192 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 BBXQ8WY36 941 aaPredicted RBP9.34□□□□□ -0.91
CCL28-204ENST00000514421 SPATA32Q96LK8 384 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 MTMR9Q96QG7 549 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 TRPC6Q9Y210 931 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 SSUH2Q9Y2M2 353 aa9.34□□□□□ -0.91
CCL28-204ENST00000514421 UMODL1Q5DID0 1318 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 FRMPD3Q5JV73 1810 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 MBLAC1A4D2B0 266 aaPredicted RBP9.33□□□□□ -0.92
CCL28-204ENST00000514421 EML1O00423 815 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 WNT7AO00755 349 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 DKC1O60832 514 aaKnown RBP eCLIP9.33□□□□□ -0.92
CCL28-204ENST00000514421 YEATS4O95619 227 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 FGBP02675 491 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 P4HBP07237 508 aaKnown RBP9.33□□□□□ -0.92
CCL28-204ENST00000514421 IQCF3P0C7M6 154 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 CKBP12277 381 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 CSF2RAP15509 400 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 SELPP16109 830 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 MCM7P33993 719 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 RFC2P35250 354 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 TOB1P50616 345 aaPredicted RBP9.33□□□□□ -0.92
CCL28-204ENST00000514421 PSMC5P62195 406 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 IGBP1P78318 339 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 RBL2Q08999 1139 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 TRIM71Q2Q1W2 868 aaKnown RBP9.33□□□□□ -0.92
CCL28-204ENST00000514421 FOXD4L6Q3SYB3 417 aaPredicted RBP9.33□□□□□ -0.92
CCL28-204ENST00000514421 RILPL1Q5EBL4 403 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 MARCH8Q5T0T0 291 aa9.33□□□□□ -0.92
CCL28-204ENST00000514421 TAF2Q6P1X5 1199 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms