RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 DDAH1O94760 285 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 KLHDC7AQ5VTJ3 777 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 IFNL1Q8IU54 200 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 SHCBP1Q8NEM2 672 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 CENPTQ96BT3 561 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 UBA5Q9GZZ9 404 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 MTMR4Q9NYA4 1195 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 FEM1BQ9UK73 627 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 EPN1Q9Y6I3 576 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 CCL15-CCL14A0A0B4J2E2 113 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TMCO5BA8MYB1 307 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TP73O15350 636 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 NOL4O94818 638 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 GH2P01242 217 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ATXN8OSP0DMR3 200 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 GHRP10912 638 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 INPP5BP32019 993 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CTCFP49711 727 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PTGISQ16647 500 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CCL15Q16663 113 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CCDC142Q17RM4 750 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ASPRV1Q53RT3 343 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF569Q5MCW4 686 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 NAA35Q5VZE5 725 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PPP4R3AQ6IN85 833 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 LRIG3Q6UXM1 1119 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 SLFN11Q7Z7L1 901 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CHURC1Q8WUH1 139 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PMM1Q92871 262 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TATDN2Q93075 761 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 MIEF2Q96C03 454 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 MS4A4AQ96JQ5 239 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 UBAC1Q9BSL1 405 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TANGO6Q9C0B7 1094 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 HOXC10Q9NYD6 342 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ARHGAP20Q9P2F6 1191 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 DACH1Q9UI36 760 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ZHX2Q9Y6X8 837 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CASP8AP2Q9UKL3 1982 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TRAPPC3O43617 180 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 EIF3JO75822 258 aaKnown RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 EEF1GP26641 437 aaKnown RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CCNA1P78396 465 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PKN2Q16513 984 aaKnown RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ARL6IP4Q66PJ3 421 aaKnown RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 MIGA2Q7L4E1 593 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 RASGEF1CQ8N431 466 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 SCFD2Q8WU76 684 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 IFT43Q96FT9 208 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 EPSTI1Q96J88 318 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PLCB1Q9NQ66 1216 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 MORF4L1Q9UBU8 362 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CAPN6Q9Y6Q1 641 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE15A4D2H0 777 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 SERPINC1P01008 464 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE8P0CG41 777 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 GTF2A1P52655 376 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE6Q86UF2 777 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE4Q8IX94 777 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 LRRC57Q8N9N7 239 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ANKLE1Q8NAG6 615 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 PHKBQ93100 1093 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 FAM107BQ9H098 131 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 TMBIM4Q9HC24 238 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 WBP1LQ9NX94 342 aa8.17□□□□□ -1.1
CLIP1-205ENST00000514271 ERLIN1O75477 346 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 MCM3P25205 808 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 TRAPPC10P48553 1259 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 TFAP4Q01664 338 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 KIF22Q14807 665 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 TCEAL1Q15170 157 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 PIGWQ7Z7B1 504 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF513Q8N8E2 541 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 CXorf38Q8TB03 319 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 SYMPKQ92797 1274 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 OTUD5Q96G74 571 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ZIM3Q96PE6 472 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 PUF60Q9UHX1 559 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 TBC1D30Q9Y2I9 924 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 PCDHA2Q9Y5H9 948 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ADGRA2Q96PE1 1338 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 MGAMO43451 1857 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 hCG_1984214I3L0E3 225 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 MPHOSPH10O00566 681 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ATP2A1O14983 1001 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF185O15231 689 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 GTPBP6O43824 516 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 CDKL5O76039 1030 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 PARNO95453 639 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 AKR1B1P15121 316 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 LMNB2Q03252 620 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 NR5A1Q13285 461 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 BTNL9Q6UXG8 535 aa8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF713Q8N859 430 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 SMCR8Q8TEV9 937 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 SYN2Q92777 582 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 ZSCAN10Q96SZ4 725 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 RBM28Q9NW13 759 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 DDX20Q9UHI6 824 aaKnown RBP8.16□□□□□ -1.1
CLIP1-205ENST00000514271 TTC7AQ9ULT0 858 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms