RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TMX1Q9H3N1 280 aa23.35■■□□□ 1.33
SQSTM1-215ENST00000514093 TAF6LQ9Y6J9 622 aa23.35■■□□□ 1.33
SQSTM1-215ENST00000514093 RRN3P2A6NIE6 340 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 H0Y858 1186 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 M0QZ92 97 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 PIK3CDO00329 1044 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 SP100P23497 879 aaPredicted RBP23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 SMC5Q8IY18 1101 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 SUSD6Q92537 303 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 CELF4Q9BZC1 486 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 TLR9Q9NR96 1032 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 HCSTQ9UBK5 93 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 SQORQ9Y6N5 450 aa23.34■■□□□ 1.33
SQSTM1-215ENST00000514093 IGSF9BQ9UPX0 1349 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 CYP21A2P08686 494 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 NFX1Q12986 1120 aaKnown RBP23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 MTMR1Q13613 665 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 PTPN21Q16825 1174 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 CATIPQ7Z7H3 387 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 RRP36Q96EU6 259 aaKnown RBP23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 CDHR1Q96JP9 859 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 NEK1Q96PY6 1258 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 MYL10Q9BUA6 226 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 TRPC6Q9Y210 931 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 PCDHB12Q9Y5F1 795 aa23.33■■□□□ 1.33
SQSTM1-215ENST00000514093 LOXHD1Q8IVV2 1947 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 TBKBP1A7MCY6 615 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 ATF7P17544 494 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 DUSP6Q16828 381 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 FAM102BQ5T8I3 360 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 ZBTB33Q86T24 672 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 PCDHB7Q9Y5E2 793 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 PCDHA2Q9Y5H9 948 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 UBIAD1Q9Y5Z9 338 aa23.32■■□□□ 1.32
SQSTM1-215ENST00000514093 MGEA5O60502 916 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 FGF18O76093 207 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 APOBRQ0VD83 1088 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 UBE2SQ16763 222 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 TMEM260Q9NX78 707 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 GINS2Q9Y248 185 aa23.31■■□□□ 1.32
SQSTM1-215ENST00000514093 IGHDP01880 384 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 TECP42680 631 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 SARSP49591 514 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 KRT76Q01546 638 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 NUCB1Q02818 461 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 UBE3AQ05086 875 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 PLCB4Q15147 1175 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 LLGL2Q6P1M3 1020 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 RALYLQ86SE5 291 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 THNSL1Q8IYQ7 743 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 CMTR1Q8N1G2 835 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 SPZ1Q9BXG8 430 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 S1PR5Q9H228 398 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 AZI2Q9H6S1 392 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 PSTPIP2Q9H939 334 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 CDHR5Q9HBB8 845 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 JADE2Q9NQC1 790 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 AAASQ9NRG9 546 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 SEC63Q9UGP8 760 aaKnown RBP23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 U3KPZ7 1027 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 MYO15AQ9UKN7 3530 aa23.3■■□□□ 1.32
SQSTM1-215ENST00000514093 RPLP2P05387 115 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 ANTXR2P58335 489 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 PTH1RQ03431 593 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 SART3Q15020 963 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 PLPP4Q5VZY2 271 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 IGDCC4Q8TDY8 1250 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 RIPOR3Q96MK2 946 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 RWDD1Q9H446 243 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 JPH1Q9HDC5 661 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 TYW1Q9NV66 732 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 CDH22Q9UJ99 828 aa23.29■■□□□ 1.32
SQSTM1-215ENST00000514093 E7EWF7 191 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 ANKRD54Q6NXT1 300 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 SYCE2Q6PIF2 218 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 COLGALT1Q8NBJ5 622 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 NCOA7Q8NI08 942 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 CDCA3Q99618 268 aaPredicted RBP23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 ADAM2Q99965 735 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 IRF2BPLQ9H1B7 796 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 SLC9A2Q9UBY0 812 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 NOC2LQ9Y3T9 749 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 CACNA1HO95180 2353 aa23.28■■□□□ 1.32
SQSTM1-215ENST00000514093 SMIM35A0A1B0GVV1 85 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 hCG_1642624A0A1W2PR95 340 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 FSCN2O14926 492 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 PLEKHA8P1O95397 391 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 MTHFD1LQ6UB35 978 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 SRBD1Q8N5C6 995 aaKnown RBP23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 CTCFLQ8NI51 663 aaPredicted RBP23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 ERVK-5Q9HDB9 667 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 TSHZ2Q9NRE2 1034 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 PCDHA6Q9UN73 950 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 PCDHA8Q9Y5H6 950 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 KDM3AQ9Y4C1 1321 aa23.27■■□□□ 1.32
SQSTM1-215ENST00000514093 DENND3A2RUS2 1198 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 STAT5BP51692 787 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 ACTR2P61160 394 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 KCNC3Q14003 757 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 ASCL5Q7RTU5 278 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms