RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TMX4Q9H1E5 349 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 TAF1DQ9H5J8 278 aaPredicted RBP10.52□□□□□ -0.72
VCAN-210ENST00000513960 NOD2Q9HC29 1040 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 LRRC4BQ9NT99 713 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 AMACRQ9UHK6 382 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 DAGLAQ9Y4D2 1042 aa10.52□□□□□ -0.72
VCAN-210ENST00000513960 ESYT2A0FGR8 921 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 EPB41P11171 864 aaKnown RBP10.52□□□□□ -0.73
VCAN-210ENST00000513960 TNNI2P48788 182 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 DUSP9Q99956 384 aaKnown RBP10.52□□□□□ -0.73
VCAN-210ENST00000513960 PACSIN1Q9BY11 444 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 MLXIPLQ9NP71 852 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 MTMR4Q9NYA4 1195 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 PNMA2Q9UL42 364 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 GAKO14976 1311 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 TNRC6CQ9HCJ0 1690 aaKnown RBP10.52□□□□□ -0.73
VCAN-210ENST00000513960 SNED1Q8TER0 1413 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 MPHOSPH10O00566 681 aaKnown RBP10.52□□□□□ -0.73
VCAN-210ENST00000513960 CACNB1Q02641 598 aaPredicted RBP10.52□□□□□ -0.73
VCAN-210ENST00000513960 KRT79Q5XKE5 535 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 OSBPL7Q9BZF2 842 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 RIOX1Q9H6W3 641 aa10.52□□□□□ -0.73
VCAN-210ENST00000513960 DDR1Q08345 913 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 ADCY1Q08828 1119 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 ZKSCAN8Q15776 578 aaPredicted RBP10.51□□□□□ -0.73
VCAN-210ENST00000513960 ASIC2Q16515 512 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 GLE1Q53GS7 698 aaKnown RBP10.51□□□□□ -0.73
VCAN-210ENST00000513960 MAEAQ7L5Y9 396 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 PEX26Q7Z412 305 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 CELF4Q9BZC1 486 aaKnown RBP10.51□□□□□ -0.73
VCAN-210ENST00000513960 DIAPH2O60879 1101 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 MMEP08473 750 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 ITGB3BPQ13352 177 aaPredicted RBP10.51□□□□□ -0.73
VCAN-210ENST00000513960 LLGL1Q15334 1064 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 MAN2A1Q16706 1144 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 IQCKQ8N0W5 287 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 KIF2BQ8N4N8 673 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 ANKRD42Q8N9B4 389 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 CRAMP1Q96RY5 1269 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 KIF9Q9HAQ2 790 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 TMBIM4Q9HC24 238 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 PLAGL2Q9UPG8 496 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 TMEM110-MUSTN1A8MSY1 372 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 AKR1B1P15121 316 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 KCNK9Q9NPC2 374 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 STK17AQ9UEE5 414 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 SWAP70Q9UH65 585 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 SERPINB13Q9UIV8 391 aa10.51□□□□□ -0.73
VCAN-210ENST00000513960 UTP11Q9Y3A2 253 aaKnown RBP10.51□□□□□ -0.73
VCAN-210ENST00000513960 DCDC2CA8MYV0 355 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 TTLL1O95922 423 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 HLA-DOAP06340 250 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 ERVK-9P63128 1117 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 CCDC38Q502W7 563 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 PPP4R3AQ6IN85 833 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 SNX29Q8TEQ0 813 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 LARP4BQ92615 738 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 PAIP2Q9BPZ3 127 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 LRRC27Q9C0I9 530 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 USP40Q9NVE5 1235 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 NAV1Q8NEY1 1877 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 PPEF1O14829 653 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 COPB2P35606 906 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 DCAF17Q5H9S7 520 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 SEPT12Q8IYM1 358 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 LRRC15Q8TF66 581 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 COA1Q9GZY4 146 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 SPATS2LQ9NUQ6 558 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 RGS16O15492 202 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 TDP2O95551 362 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 ABCB4P21439 1286 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 HOXA10P31260 410 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 MRPL12P52815 198 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 PLTPP55058 493 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 LRRC14Q15048 493 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 OTUD6AQ7L8S5 288 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 PSMD1Q99460 953 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 TRIM51Q9BSJ1 452 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 INTS9Q9NV88 658 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.5□□□□□ -0.73
VCAN-210ENST00000513960 TTI1O43156 1089 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 SART1O43290 800 aaKnown RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 RASSF9O75901 435 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 TRIM37O94972 964 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 UPP2O95045 317 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 CDC37Q16543 378 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 AP1ARQ63HQ0 302 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 PDXDC1Q6P996 788 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 SP8Q8IXZ3 490 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 CCDC26Q8TAB7 109 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 CHMP6Q96FZ7 201 aa10.5□□□□□ -0.73
VCAN-210ENST00000513960 BMP2KQ9NSY1 1161 aaPredicted RBP10.5□□□□□ -0.73
VCAN-210ENST00000513960 PNMA6FA0A0J9YX94 578 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 ZNF844Q08AG5 666 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 MTMR3Q13615 1198 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 CRYMQ14894 314 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 UNC13DQ70J99 1090 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 CLEC10AQ8IUN9 316 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 CUL5Q93034 780 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 ZBTB10Q96DT7 871 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms