RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PLEKHG4Q58EX7 1191 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 POTEBQ6S5H4 581 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 DEFB128Q7Z7B8 93 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 LINC01465Q8N7H1 131 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 PHOSPHO2Q8TCD6 241 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 TNPO1Q92973 898 aaKnown RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 TMX3Q96JJ7 454 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 NAP1L4Q99733 375 aaKnown RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 PBX4Q9BYU1 374 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 TTYH1Q9H313 450 aaPredicted RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 SEMA6BQ9H3T3 888 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 DDX25Q9UHL0 483 aaKnown RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 TUBE1Q9UJT0 475 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 GTF3C3Q9Y5Q9 886 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 TANC1Q9C0D5 1861 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 SMIM35A0A1B0GVV1 85 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 ABHD14A-ACY1A0A1B0GW23 586 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 EML1O00423 815 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 ST18O60284 1047 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 GAS7O60861 476 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 RPLP2P05387 115 aaKnown RBP10.97□□□□□ -0.65
RNF4-221ENST00000513643 U2AF2P26368 475 aaKnown RBP eCLIP10.97□□□□□ -0.656e-8■□□□□ 9.9
RNF4-221ENST00000513643 MCM2P49736 904 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 JAK3P52333 1124 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 ZNF484Q5JVG2 852 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 LRCH2Q5VUJ6 765 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 FAM160B1Q5W0V3 765 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 PDXDC2PQ6P474 469 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 CNKSR3Q6P9H4 555 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 MTHFD1LQ6UB35 978 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 NME8Q8N427 588 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 DEFB123Q8N688 67 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 BBXQ8WY36 941 aaPredicted RBP10.97□□□□□ -0.65
RNF4-221ENST00000513643 ZBTB10Q96DT7 871 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 MTMR9Q96QG7 549 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 TEKT3Q9BXF9 490 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 FOXP1Q9H334 677 aaPredicted RBP10.97□□□□□ -0.65
RNF4-221ENST00000513643 UPF2Q9HAU5 1272 aaKnown RBP10.97□□□□□ -0.65
RNF4-221ENST00000513643 SQORQ9Y6N5 450 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 KDM3AQ9Y4C1 1321 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 COL1A2P08123 1366 aa10.97□□□□□ -0.65
RNF4-221ENST00000513643 BACH1O14867 736 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 CCNT1O60563 726 aaKnown RBP10.96□□□□□ -0.65
RNF4-221ENST00000513643 C22orf31O95567 290 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 ACTN1P12814 892 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 DNAJB2P25686 324 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 KLRC1P26715 233 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 PBX2P40425 430 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 CUL4AQ13619 759 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 UGCGQ16739 394 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 Q7L0L9 218 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 KIAA0319LQ8IZA0 1049 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 DBF4BQ8NFT6 615 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 TRAPPC12Q8WVT3 735 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 C8orf76Q96K31 380 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 GUCD1Q96NT3 240 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 NIFKQ9BYG3 293 aaKnown RBP10.96□□□□□ -0.65
RNF4-221ENST00000513643 MTIF3Q9H2K0 278 aaKnown RBP10.96□□□□□ -0.65
RNF4-221ENST00000513643 BRMS1Q9HCU9 246 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 GABBR1Q9UBS5 961 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 SLC4A7Q9Y6M7 1214 aa10.96□□□□□ -0.65
RNF4-221ENST00000513643 IGKV6-21A0A0C4DH24 114 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 EFCAB14O75071 495 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 ATP2A2P16615 1042 aaKnown RBP10.95□□□□□ -0.66
RNF4-221ENST00000513643 WDR5P61964 334 aaKnown RBP10.95□□□□□ -0.66
RNF4-221ENST00000513643 LPIN1Q14693 890 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 FBXO47Q5MNV8 452 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 FAM43BQ6ZT52 329 aaPredicted RBP10.95□□□□□ -0.66
RNF4-221ENST00000513643 CRIPAKQ8N1N5 446 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 C4orf32Q8N8J7 132 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 DNAJB3Q8WWF6 145 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 FAM167AQ96KS9 214 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 SLC9A7Q96T83 725 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 HSD17B14Q9BPX1 270 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 FTOQ9C0B1 505 aaKnown RBP eCLIP10.95□□□□□ -0.66
RNF4-221ENST00000513643 TRPC6Q9Y210 931 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 YBX2Q9Y2T7 364 aaKnown RBP10.95□□□□□ -0.66
RNF4-221ENST00000513643 PCDHA11Q9Y5I1 949 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 KAT6AQ92794 2004 aa10.95□□□□□ -0.66
RNF4-221ENST00000513643 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.94□□□□□ -0.66
RNF4-221ENST00000513643 KIF28PB7ZC32 967 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 OATP04181 439 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 TRAPPC10P48553 1259 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 IGBP1P78318 339 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 MRPS6P82932 125 aaKnown RBP10.94□□□□□ -0.66
RNF4-221ENST00000513643 GUCY1B3Q02153 619 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 ORC2Q13416 577 aaPredicted RBP10.94□□□□□ -0.66
RNF4-221ENST00000513643 TRIM29Q14134 588 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 IKBKEQ14164 716 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 EPHA7Q15375 998 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 XKR3Q5GH77 459 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 MIER3Q7Z3K6 550 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 RSPH3Q86UC2 560 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 HERC6Q8IVU3 1022 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 SLFN12Q8IYM2 578 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 TIFAQ96CG3 184 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 TMEM60Q9H2L4 133 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 AGO3Q9H9G7 860 aaKnown RBP10.94□□□□□ -0.66
RNF4-221ENST00000513643 NRBP2Q9NSY0 501 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 WRAP73Q9P2S5 460 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms