RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZDHHC5Q9C0B5 715 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 NELFAQ9H3P2 528 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 TLR9Q9NR96 1032 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 ST7Q9NRC1 585 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 TRAV20A0A0B4J274 112 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 PLSCR1O15162 318 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 PABPC1P11940 636 aaKnown RBP4.72□□□□□ -1.65
NUP54-208ENST00000508604 MSX2P35548 267 aaPredicted RBP4.72□□□□□ -1.65
NUP54-208ENST00000508604 OTOP2Q7RTS6 562 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 ZNF575Q86XF7 245 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 LRRC47Q8N1G4 583 aaKnown RBP4.72□□□□□ -1.65
NUP54-208ENST00000508604 CACTINQ8WUQ7 758 aaKnown RBP4.72□□□□□ -1.65
NUP54-208ENST00000508604 ZG16BQ96DA0 208 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 ZNF408Q9H9D4 720 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 INCENPQ9NQS7 918 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 PLA2G3Q9NZ20 509 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 REXO2Q9Y3B8 237 aaKnown RBP4.72□□□□□ -1.65
NUP54-208ENST00000508604 ATP23Q9Y6H3 246 aa4.72□□□□□ -1.65
NUP54-208ENST00000508604 PTGS1P23219 599 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 ERCC5P28715 1186 aaPredicted RBP4.71□□□□□ -1.66
NUP54-208ENST00000508604 NANOS3P60323 173 aaKnown RBP4.71□□□□□ -1.66
NUP54-208ENST00000508604 RTKN2Q8IZC4 609 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 THEMISQ8N1K5 641 aaPredicted RBP4.71□□□□□ -1.66
NUP54-208ENST00000508604 MMRN2Q9H8L6 949 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 PARPBPQ9NWS1 579 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 GALNT8Q9NY28 637 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 SRPK3Q9UPE1 567 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 GIT1Q9Y2X7 761 aa4.71□□□□□ -1.66
NUP54-208ENST00000508604 AQP7O14520 342 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 U2SURPO15042 1029 aaKnown RBP4.7□□□□□ -1.66
NUP54-208ENST00000508604 ADCY8P40145 1251 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 FOXL1Q12952 345 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 PAK1Q13153 545 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 GRM7Q14831 915 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 GPR19Q15760 415 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 ARHGAP36Q6ZRI8 547 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 MRGPRGQ86SM5 289 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 ADGRE4PQ86SQ3 457 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 MTDHQ86UE4 582 aaKnown RBP4.7□□□□□ -1.66
NUP54-208ENST00000508604 CRAMP1Q96RY5 1269 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 CATSPERZQ9NTU4 200 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 BLACEA4D250 179 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 PRAMEF25A6NGN4 478 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 GSTA4O15217 222 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 APPP05067 770 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 NAT1P18440 290 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 ST5P78524 1137 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 IL13RA1P78552 427 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 ARID5AQ03989 594 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 CRHR2Q13324 411 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 NTRK3Q16288 839 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 DDR2Q16832 855 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 D2HGDHQ8N465 521 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 IPO9Q96P70 1041 aaKnown RBP4.7□□□□□ -1.66
NUP54-208ENST00000508604 PRRX2Q99811 253 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 KIAA1683Q9H0B3 1180 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 OR10A2Q9H208 303 aa4.7□□□□□ -1.66
NUP54-208ENST00000508604 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.69□□□□□ -1.66
NUP54-208ENST00000508604 CAPN14A8MX76 684 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 MATN2O00339 956 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 DUSP8Q13202 625 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 EIF4HQ15056 248 aaKnown RBP4.69□□□□□ -1.66
NUP54-208ENST00000508604 FIGNQ5HY92 759 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 FILIP1Q7Z7B0 1213 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 ST13P5Q8NFI4 369 aaPredicted RBP4.69□□□□□ -1.66
NUP54-208ENST00000508604 SH3RF2Q8TEC5 729 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 OSBP2Q969R2 916 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 FBXW5Q969U6 566 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 WNK4Q96J92 1243 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 BTBD2Q9BX70 525 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 ZNF703Q9H7S9 590 aaPredicted RBP4.69□□□□□ -1.66
NUP54-208ENST00000508604 ARHGEF4Q9NR80 690 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 CDC42EP3Q9UKI2 254 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 FAM184BQ9ULE4 1060 aa4.69□□□□□ -1.66
NUP54-208ENST00000508604 A0A0G2JNJ9 132 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 FAM90A27PA6NNH2 459 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 RAMP2O60895 175 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 KRT15P19012 456 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 MRE11P49959 708 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 HERVK_113P62684 666 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 PCOLCEQ15113 449 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 CRY1Q16526 586 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 HNRNPLLQ8WVV9 542 aaKnown RBP4.68□□□□□ -1.66
NUP54-208ENST00000508604 KIAA1522Q9P206 1035 aaPredicted RBP4.68□□□□□ -1.66
NUP54-208ENST00000508604 Q9UFV3 132 aa4.68□□□□□ -1.66
NUP54-208ENST00000508604 TBR1Q16650 682 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 FAM47CQ5HY64 1035 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 ANKS3Q6ZW76 656 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 LARP4Q71RC2 724 aaKnown RBP eCLIP4.67□□□□□ -1.66
NUP54-208ENST00000508604 MAMDC2Q7Z304 686 aaPredicted RBP4.67□□□□□ -1.66
NUP54-208ENST00000508604 LDLRAD3Q86YD5 345 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 SHCBP1Q8NEM2 672 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 OR14K1Q8NGZ2 314 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 LARP4BQ92615 738 aaKnown RBP4.67□□□□□ -1.66
NUP54-208ENST00000508604 CLIP3Q96DZ5 547 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 TCRBV5S4A2TA0A5A2 114 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 FGRP09769 529 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 PDE6AP16499 860 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 TGM1P22735 817 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 AOAHP28039 575 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms