RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 REXO1Q8N1G1 1221 aaKnown RBP5.89□□□□□ -1.47
NUP54-206ENST00000508465 ZNF428Q96B54 188 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 KCNQ5Q9NR82 932 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 COL15A1P39059 1388 aa5.89□□□□□ -1.47
NUP54-206ENST00000508465 ADAMTS7Q9UKP4 1686 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 VIRMAQ69YN4 1812 aaKnown RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 ELL2O00472 640 aaPredicted RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 CHL1O00533 1208 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 TNFRSF10CO14798 259 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 PLA2G1BP04054 148 aaKnown RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 CNR2P34972 360 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 ZNF165P49910 485 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 GJA9P57773 515 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 TGFB2P61812 414 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 PRR5P85299 388 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 PROSER3Q2NL68 480 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 RTP2Q5QGT7 225 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 CCDC144CPQ8IYA2 1237 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 C7orf61Q8IZ16 206 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 FAM9BQ8IZU0 186 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 ZNF526Q8TF50 670 aaPredicted RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 ZNF296Q8WUU4 475 aaPredicted RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 SLC12A9Q9BXP2 914 aa5.88□□□□□ -1.47
NUP54-206ENST00000508465 COL5A3P25940 1745 aaPredicted RBP5.88□□□□□ -1.47
NUP54-206ENST00000508465 NPHP1O15259 732 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 TBC1D8O95759 1140 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 ATF2P15336 505 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 GPTP24298 496 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 HTRA3P83110 453 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 ZXDAP98168 799 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 CLCQ05315 142 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 LMOD3Q0VAK6 560 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 AIMP1Q12904 312 aaKnown RBP5.87□□□□□ -1.47
NUP54-206ENST00000508465 SEZ6Q53EL9 994 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 NOL9Q5SY16 702 aaKnown RBP5.87□□□□□ -1.47
NUP54-206ENST00000508465 ERMP1Q7Z2K6 904 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 C2CD5Q86YS7 1000 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 DDX1Q92499 740 aaKnown RBP5.87□□□□□ -1.47
NUP54-206ENST00000508465 ZNF622Q969S3 477 aaKnown RBP eCLIP5.87□□□□□ -1.47
NUP54-206ENST00000508465 SMPD4Q9NXE4 827 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 ZNF831Q5JPB2 1677 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 SIPA1L3O60292 1781 aaPredicted RBP5.87□□□□□ -1.47
NUP54-206ENST00000508465 DLG5Q8TDM6 1919 aa5.87□□□□□ -1.47
NUP54-206ENST00000508465 COL24A1Q17RW2 1714 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 CICQ96RK0 1608 aaPredicted RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 TCERG1O14776 1098 aaKnown RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 ITGB3P05106 788 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 CORO7P57737 925 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 ADAM17P78536 824 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 DALRD3Q5D0E6 543 aaKnown RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 PRR5LQ6MZQ0 368 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 COPS6Q7L5N1 327 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 NBPF5PQ86XG9 351 aaPredicted RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 CARFQ8N187 725 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 C8orf58Q8NAV2 365 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 ALG3Q92685 438 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 SRRTQ9BXP5 876 aaKnown RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 COPRSQ9NQ92 184 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 SUCOQ9UBS9 1254 aaKnown RBP5.86□□□□□ -1.47
NUP54-206ENST00000508465 NIP7Q9Y221 180 aaKnown RBP eCLIP5.86□□□□□ -1.47
NUP54-206ENST00000508465 HCFC2Q9Y5Z7 792 aa5.86□□□□□ -1.47
NUP54-206ENST00000508465 UBR2Q8IWV8 1755 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 PXDNLA1KZ92 1463 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 H0YIN7 160 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 AKAP8O43823 692 aaKnown RBP5.85□□□□□ -1.47
NUP54-206ENST00000508465 NOBOXO60393 691 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 ZNF853P0CG23 659 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 APOBRQ0VD83 1088 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 INTS3Q68E01 1043 aaKnown RBP5.85□□□□□ -1.47
NUP54-206ENST00000508465 CLEC4GQ6UXB4 293 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 KIF6Q6ZMV9 814 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 SND1Q7KZF4 910 aaKnown RBP eCLIP5.85□□□□□ -1.47
NUP54-206ENST00000508465 B3GNT8Q7Z7M8 397 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 SYNE4Q8N205 404 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 CNBD1Q8NA66 436 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 TSR2Q969E8 191 aaKnown RBP5.85□□□□□ -1.47
NUP54-206ENST00000508465 BRIP1Q9BX63 1249 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 LNPKQ9C0E8 428 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 BABAM1Q9NWV8 329 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 CHPF2Q9P2E5 772 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 SRRDQ9UH36 339 aa5.85□□□□□ -1.47
NUP54-206ENST00000508465 C10orf71Q711Q0 1435 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 CARMIL3Q8ND23 1372 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 MAP3K15Q6ZN16 1313 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 MEIS3P2A8K0S8 358 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 ERVV-1B6SEH8 477 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 FGF10O15520 208 aaPredicted RBP5.84□□□□□ -1.47
NUP54-206ENST00000508465 ASGR2P07307 311 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 L1CAMP32004 1257 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 CRKP46108 304 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 SARSP49591 514 aaKnown RBP5.84□□□□□ -1.47
NUP54-206ENST00000508465 GNAI1P63096 354 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 SUSD4Q5VX71 490 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 CPZQ66K79 652 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 OLFM4Q6UX06 510 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 LRP10Q7Z4F1 713 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 CABP7Q86V35 215 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 TSPYL6Q8N831 410 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 TTLL6Q8N841 843 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 SLC9A7Q96T83 725 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms