RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZP2Q05996 745 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 KRT32Q14532 448 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 RTN1Q16799 776 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 SPOUT1Q5T280 376 aaKnown RBP23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 CD207Q9UJ71 328 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 IGSF9BQ9UPX0 1349 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 PCDHB7Q9Y5E2 793 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 PCDHB12Q9Y5F1 795 aa23.97■■□□□ 1.43
SQSTM1-210ENST00000506042 COL1A2P08123 1366 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 KDM3AQ9Y4C1 1321 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 DENND3A2RUS2 1198 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 GRM6O15303 877 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 ZBTB43O43298 467 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 HBP1O60381 514 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 HMGB1P09429 215 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 SMAD2Q15796 467 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 MARCH8Q5T0T0 291 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 NIPA1Q7RTP0 329 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 NEK1Q96PY6 1258 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 LSG1Q9H089 658 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 IGFLR1Q9H665 355 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 C1orf112Q9NSG2 853 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 PADI3Q9ULW8 664 aa23.96■■□□□ 1.43
SQSTM1-210ENST00000506042 BRWD1Q9NSI6 2320 aa23.95■■□□□ 1.43
SQSTM1-210ENST00000506042 TTC3P53804 2025 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 CTC1Q2NKJ3 1217 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 MIS18BP1Q6P0N0 1132 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 APOA5Q6Q788 366 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 ZNF710Q8N1W2 664 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 MFSD14AQ96MC6 490 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 ANO3Q9BYT9 981 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 RC3H2Q9HBD1 1191 aaKnown RBP23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 PLAGL2Q9UPG8 496 aa23.95■■□□□ 1.42
SQSTM1-210ENST00000506042 hCG_1642624A0A1W2PR95 340 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 GPR182O15218 404 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 RCAN1P53805 252 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 UBE3AQ05086 875 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 HYAL1Q12794 435 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 NFX1Q12986 1120 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 PLCB4Q15147 1175 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 NECTIN1Q15223 517 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 CKAP2LQ8IYA6 745 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 KHSRPQ92945 711 aaKnown RBP eCLIP23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 OSBPL7Q9BZF2 842 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 C11orf16Q9NQ32 467 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 CEP131Q9UPN4 1083 aa23.94■■□□□ 1.42
SQSTM1-210ENST00000506042 SMCO2A6NFE2 343 aa23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 RPS6KA5O75582 802 aa23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 SARSP49591 514 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 SETQ01105 290 aaPredicted RBP23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 ZNF484Q5JVG2 852 aa23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 WWC2Q6AWC2 1192 aa23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 PDE12Q6L8Q7 609 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 AGO4Q9HCK5 861 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 ALG13Q9NP73 1137 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-210ENST00000506042 STXBP3O00186 592 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 MBTPS2O43462 519 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 SREBF1P36956 1147 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 TMEM62Q0P6H9 643 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 PDXDC2PQ6P474 469 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 MTHFD1LQ6UB35 978 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 RAB11FIP4Q86YS3 637 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 MICAL1Q8TDZ2 1067 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 ATP8B4Q8TF62 1192 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 AGO3Q9H9G7 860 aaKnown RBP23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 ZNF302Q9NR11 478 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 TBC1D22BQ9NU19 505 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 BARHL2Q9NY43 387 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 NAP1L2Q9ULW6 460 aaPredicted RBP23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 GINS2Q9Y248 185 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 TELO2Q9Y4R8 837 aa23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 MRPL42Q9Y6G3 142 aaKnown RBP23.92■■□□□ 1.42
SQSTM1-210ENST00000506042 CNTNAP5Q8WYK1 1306 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 C19orf67A6NJJ6 358 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 GOLGA8AA7E2F4 631 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 GOLGA8BA8MQT2 603 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 HOXA2O43364 376 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 KLRC1P26715 233 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 PKN1Q16512 942 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 PAN2Q504Q3 1202 aaKnown RBP23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 DHX32Q7L7V1 743 aaKnown RBP23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 LRRC2Q9BYS8 371 aa23.91■■□□□ 1.42
SQSTM1-210ENST00000506042 MEIS1O00470 390 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 CSPG5O95196 566 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 ATG7O95352 703 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 TMOD1P28289 359 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 AKAP17AQ02040 695 aaKnown RBP23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 ADAM15Q13444 863 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 CLUL1Q15846 466 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 SLC24A5Q71RS6 500 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 PLA2G4DQ86XP0 818 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 EFHBQ8N7U6 833 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 CDCA3Q99618 268 aaPredicted RBP23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 C6orf50Q9HD87 102 aa23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 PUF60Q9UHX1 559 aaKnown RBP23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 V9GY48 417 aaPredicted RBP23.9■■□□□ 1.42
SQSTM1-210ENST00000506042 GNA11P29992 359 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 LTBRP36941 435 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 SMAP1Q8IYB5 467 aaPredicted RBP23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 KLHL23Q8NBE8 558 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms