RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	TMEM266	Q2M3C6	531 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TRIM60	Q495X7	471 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATL3	Q6DD88	541 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	NCAPH2	Q6IBW4	605 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	DTHD1	Q6ZMT9	781 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FAM126B	Q8IXS8	530 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	C7orf31	Q8N865	590 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TNPO1	Q92973	898 aa	Known RBP	13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ZNF396	Q96N95	335 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	HDAC6	Q9UBN7	1215 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	GABBR1	Q9UBS5	961 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CLIC4	Q9Y696	253 aa		13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.38	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SI	P14410	1827 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	DCDC2C	A8MYV0	355 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TLR3	O15455	904 aa	Known RBP	13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	DKC1	O60832	514 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CD4	P01730	458 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SMIM10L2A	P0DMW4	78 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SMIM10L2B	P0DMW5	78 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATP4A	P20648	1035 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	MARK3	P27448	753 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CHMP4BP1	P59074	171 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PSMC5	P62195	406 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TLE2	Q04725	743 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PLCB4	Q15147	1175 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PTPA	Q15257	358 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	IL17A	Q16552	155 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FAM47C	Q5HY64	1035 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	IGSF22	Q8N9C0	903 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	NEK9	Q8TD19	979 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATP8B4	Q8TF62	1192 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATP6V0A1	Q93050	837 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	USP28	Q96RU2	1077 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	RAB34	Q9BZG1	259 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	GTF2IRD1	Q9UHL9	959 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATP11B	Q9Y2G3	1177 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	NRCAM	Q92823	1304 aa		13.37	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TET1	Q8NFU7	2136 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	POTEB3	A0JP26	581 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	POTEM	A6NI47	508 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ZNF862	O60290	1169 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	HBP1	O60381	514 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	EVI5	O60447	810 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PQBP1	O60828	265 aa	Known RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	GNAT1	P11488	350 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	QARS	P47897	775 aa	Known RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	NASP	P49321	788 aa	Predicted RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SLC39A14	Q15043	492 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	UGCG	Q16739	394 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	GDF6	Q6KF10	455 aa	Predicted RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	POTEB	Q6S5H4	581 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CKAP2L	Q8IYA6	745 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PPP1R13L	Q8WUF5	828 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	BBX	Q8WY36	941 aa	Predicted RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FAM167A	Q96KS9	214 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	HSD17B14	Q9BPX1	270 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	STK24	Q9Y6E0	443 aa		13.36	□□□□□ -0.27
PDLIM5-208	ENST00000504489	COL1A2	P08123	1366 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	C17orf102	A2RUQ5	167 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	RRN3P2	A6NIE6	340 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	B4GALT4	O60513	344 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SLITRK3	O94933	977 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	STBD1	O95210	358 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	INSRR	P14616	1297 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ADAM17	P78536	824 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PRKCE	Q02156	737 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	MLLT1	Q03111	559 aa	Predicted RBP	13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CEBPZ	Q03701	1054 aa	Known RBP	13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	FAAP100	Q0VG06	881 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	PPFIA1	Q13136	1202 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	HIC1	Q14526	733 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	XKR3	Q5GH77	459 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	C4orf19	Q8IY42	314 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	BANK1	Q8NDB2	785 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	DPF3	Q92784	378 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	DYDC2	Q96IM9	177 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TRPV6	Q9H1D0	765 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ZSWIM4	Q9H7M6	989 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TUFT1	Q9NNX1	390 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	NRBP2	Q9NSY0	501 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TRMT13	Q9NUP7	481 aa	Known RBP	13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	RGL1	Q9NZL6	768 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	TFIP11	Q9UBB9	837 aa	Known RBP	13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	LRWD1	Q9UFC0	647 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CFAP45	Q9UL16	551 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	BOLA1	Q9Y3E2	137 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	ATP6V1D	Q9Y5K8	247 aa		13.35	□□□□□ -0.27
PDLIM5-208	ENST00000504489	VWA3A	A6NCI4	1184 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	LYPLA2	O95372	231 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	YEATS4	O95619	227 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	OAT	P04181	439 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	CLTB	P09497	229 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	SPATA31C1	P0DKV0	1188 aa		13.34	□□□□□ -0.27
PDLIM5-208	ENST00000504489	MUT	P22033	750 aa		13.34	□□□□□ -0.27

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