RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SFI1A8K8P3 1242 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 IKBKBO14920 756 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 KRT3P12035 628 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 SNX1Q13596 522 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 MUM1Q2TAK8 710 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 SLFNL1Q499Z3 407 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 MCPH1Q8NEM0 835 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 PAGE5Q96GU1 130 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 CHAMP1Q96JM3 812 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 CRB1P82279 1406 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 POC1B-GALNT4F8VUJ3 575 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 BNIP3LO60238 219 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 GUCY2DQ02846 1103 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 TNFAIP2Q03169 654 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 MFSD14CQ5VZR4 134 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 JADE1Q6IE81 842 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 ATP6V1E2Q96A05 226 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 CHMP6Q96FZ7 201 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 MAPK6Q16659 721 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 ZNF667Q5HYK9 610 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 PPP4R3CPQ6ZMV5 832 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 DDX27Q96GQ7 796 aaKnown RBP14.17□□□□□ -0.14
PTPRF-215ENST00000496447 SPON1Q9HCB6 807 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 NEDD4P46934 1319 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 JCADQ9P266 1359 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 ARHGAP42A6NI28 874 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 CIITAP33076 1130 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 NFIXQ14938 502 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 LRRC23Q53EV4 343 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-215ENST00000496447 TBC1D10CQ8IV04 446 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 PHLPP2Q6ZVD8 1323 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 CPSF1Q10570 1443 aaKnown RBP14.17□□□□□ -0.14
PTPRF-215ENST00000496447 C1orf228Q6PIY5 440 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 SLC44A5Q8NCS7 719 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 GDAP1Q8TB36 358 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 RCOR1Q9UKL0 485 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 THOC5Q13769 683 aaKnown RBP14.17□□□□□ -0.14
PTPRF-215ENST00000496447 TEX2Q8IWB9 1127 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 CEP95Q96GE4 821 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 DCP1AQ9NPI6 582 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-215ENST00000496447 USH1CQ9Y6N9 552 aa14.17□□□□□ -0.14
PTPRF-215ENST00000496447 A2ML1A8K2U0 1454 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 SPDYE2BA6NHP3 402 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 CLDN3O15551 220 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 SPDYE6P0CI01 402 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 KRT76Q01546 638 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 ZNF302Q9NR11 478 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L15C9J2P7 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L13C9JLJ4 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L11C9JVI0 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L18D6R9N7 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L22D6RA61 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L17D6RBQ6 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L19D6RCP7 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L20D6RJB6 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 TXNDC9O14530 226 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 FCER1AP12319 257 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 LRRC63Q05C16 580 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L24Q0WX57 530 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 IQCB1Q15051 598 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 USP17L6PQ6QN14 398 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 ELMOD1Q8N336 334 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 NCAPGQ9BPX3 1015 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 FRMD3A2A2Y4 597 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 ZBBXA8MT70 800 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 GPC4O75487 556 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 ZNF18P17022 549 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 NECTIN1Q15223 517 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 TADA2BQ86TJ2 420 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 KSR1Q8IVT5 923 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 CPVLQ9H3G5 476 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 SPTLC3Q9NUV7 552 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 VCX3AQ9NNX9 186 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 PLA2R1Q13018 1463 aa14.16□□□□□ -0.14
PTPRF-215ENST00000496447 CLCN6P51797 869 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 PFKFB3Q16875 520 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 PPP1R18Q6NYC8 613 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 IRAK4Q9NWZ3 460 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 STK25O00506 426 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ENC1O14682 589 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 PFDN1O60925 122 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ECEL1O95672 775 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ATXN8OSP0DMR3 200 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 BASP1P80723 227 aaKnown RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 GOLGA8FQ08AF8 430 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 GOLGA8DPQ0D2H9 430 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 MAP3K21Q5TCX8 1036 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 TDRD7Q8NHU6 1098 aaKnown RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 URGCPQ8TCY9 931 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 BAG5Q9UL15 447 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ERICH1Q86X53 443 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ACAD9Q9H845 621 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ACTR5Q9H9F9 607 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 TPX2Q9ULW0 747 aaKnown RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 NMT2O60551 498 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 CHRNA5P30532 468 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ASPHQ12797 758 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ZBTB17Q13105 803 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 ZNF568Q3ZCX4 644 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 PADI6Q6TGC4 694 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms