RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 GOLGA8BA8MQT2 603 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 GPR37L1O60883 481 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 ATP9AO75110 1047 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 INSRRP14616 1297 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 ACTR2P61160 394 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 IRX6P78412 446 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-213ENST00000493475 AKAP17AQ02040 695 aaKnown RBP13.19□□□□□ -0.3
COL6A3-213ENST00000493475 LPIN1Q14693 890 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 NECTIN1Q15223 517 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 FBXO47Q5MNV8 452 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 MIS18BP1Q6P0N0 1132 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 APOA5Q6Q788 366 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 RUFY4Q6ZNE9 571 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 DHX32Q7L7V1 743 aaKnown RBP13.19□□□□□ -0.3
COL6A3-213ENST00000493475 NIPA1Q7RTP0 329 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 NPAS4Q8IUM7 802 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 FAM178BQ8IXR5 827 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 AAASQ9NRG9 546 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 CLDND1Q9NY35 253 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 PCDHA2Q9Y5H9 948 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 MICAL3Q7RTP6 2002 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 SMIM35A0A1B0GVV1 85 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 hCG_1642624A0A1W2PR95 340 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 POTEB3A0JP26 581 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 SMCO2A6NFE2 343 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 GRXCR2A6NFK2 248 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 ENPP3O14638 875 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 SETQ01105 290 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-213ENST00000493475 KRT76Q01546 638 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 MGAT3Q09327 533 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 TCEAL5Q5H9L2 206 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 POTEBQ6S5H4 581 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 CMTR2Q8IYT2 770 aaKnown RBP13.18□□□□□ -0.3
COL6A3-213ENST00000493475 NEK9Q8TD19 979 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 LRFN3Q9BTN0 628 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 ANO3Q9BYT9 981 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 BARHL2Q9NY43 387 aa13.18□□□□□ -0.3
COL6A3-213ENST00000493475 PI4K2BG5E9Z4 385 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 H3BQ06 376 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 HBP1O60381 514 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 SCG2P13521 617 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 GNA11P29992 359 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 SREBF1P36956 1147 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 WWC2Q6AWC2 1192 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CENPQQ7L2Z9 268 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 RAB11FIP4Q86YS3 637 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CKAP2LQ8IYA6 745 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 ZNF710Q8N1W2 664 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 BICD2Q8TD16 824 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CLP1Q92989 425 aaKnown RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 P2RX5Q93086 422 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 LRRC2Q9BYS8 371 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CELF4Q9BZC1 486 aaKnown RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 EPHX3Q9H6B9 360 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 C6orf50Q9HD87 102 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 TBC1D22BQ9NU19 505 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CEP131Q9UPN4 1083 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 V9GY48 417 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 TCF20Q9UGU0 1960 aaKnown RBP13.17□□□□□ -0.3
COL6A3-213ENST00000493475 COL1A2P08123 1366 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 PTPRSQ13332 1948 aa13.17□□□□□ -0.3
COL6A3-213ENST00000493475 CNTNAP5Q8WYK1 1306 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 KLF18A0A0U1RQI7 1052 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 DENND3A2RUS2 1198 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 PRR33A8MZF0 331 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 GPR182O15218 404 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 DGKIO75912 1065 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 MMP1P03956 469 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 SRGAP2BP0DMP2 458 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 CD52P31358 61 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 METAP2P50579 478 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL6A3-213ENST00000493475 ZNF484Q5JVG2 852 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 MARCH8Q5T0T0 291 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 SPOUT1Q5T280 376 aaKnown RBP13.16□□□□□ -0.3
COL6A3-213ENST00000493475 PDXDC2PQ6P474 469 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-213ENST00000493475 AGO4Q9HCK5 861 aaKnown RBP13.16□□□□□ -0.3
COL6A3-213ENST00000493475 ZNF302Q9NR11 478 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 C1orf112Q9NSG2 853 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 PCDHB7Q9Y5E2 793 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 PCDHB12Q9Y5F1 795 aa13.16□□□□□ -0.3
COL6A3-213ENST00000493475 IGSF9BQ9UPX0 1349 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 KDM3AQ9Y4C1 1321 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 KAT6AQ92794 2004 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 MEIS1O00470 390 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 DCXO43602 365 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 CDC45O75419 566 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 RPS6KA5O75582 802 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 SEC24BO95487 1268 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 IL9P15248 144 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 TMOD1P28289 359 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 NFX1Q12986 1120 aaKnown RBP13.15□□□□□ -0.3
COL6A3-213ENST00000493475 PLCB4Q15147 1175 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 IER5LQ5T953 404 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 MTHFD1LQ6UB35 978 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 PLA2G4DQ86XP0 818 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 SMAP1Q8IYB5 467 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-213ENST00000493475 CCDC148Q8NFR7 591 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 ATP8B4Q8TF62 1192 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 ZNF689Q96CS4 500 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms