RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 ZNF512BQ96KM6 892 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 DUSP23Q9BVJ7 150 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 CCDC39Q9UFE4 941 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 GJD2Q9UKL4 321 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 COL2A1P02458 1487 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 SORBS3O60504 671 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 PRNPP04156 253 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 NTF4P34130 210 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 LIG3P49916 1009 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 UBXN2AP68543 259 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 JAG1P78504 1218 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 SPP2Q13103 211 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 SEPT6Q14141 434 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 INPP5AQ14642 412 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 ANKRD13CQ8N6S4 541 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 FAM181AQ8N9Y4 354 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 KCT2Q8NC54 265 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 SH3RF3Q8TEJ3 882 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 U2AF1L4Q8WU68 220 aaKnown RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 DHX36Q9H2U1 1008 aaKnown RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 DNAJC18Q9H819 358 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 PAK6Q9NQU5 681 aaPredicted RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 PI4KBQ9UBF8 816 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 VTI1BQ9UEU0 232 aa7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 HERC5Q9UII4 1024 aaKnown RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 NOP58Q9Y2X3 529 aaKnown RBP7.79□□□□□ -1.16
PRPF40A-210ENST00000489741 ZSWIM8A7E2V4 1837 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 TNPO2O14787 897 aaKnown RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 HOXA7P31268 230 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 GCLCP48506 637 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 IRAK1P51617 712 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 HMGCS2P54868 508 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 TAGLNQ01995 201 aaKnown RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 RING1Q06587 406 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 TNNI3KQ59H18 835 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 WIPI1Q5MNZ9 446 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 GORABQ5T7V8 394 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 UBE3DQ7Z6J8 389 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 ADGRA1Q86SQ6 560 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 FOXP4Q8IVH2 680 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 TEX11Q8IYF3 940 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 TMEM57Q8N5G2 664 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 FLCNQ8NFG4 579 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 ZNF507Q8TCN5 953 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 DPF3Q92784 378 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 CRELD1Q96HD1 420 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 ASCC2Q9H1I8 757 aaPredicted RBP7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 GINM1Q9NU53 330 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 RAI14Q9P0K7 980 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 LRP2BPQ9P2M1 347 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 MORF4L1Q9UBU8 362 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 PCDHB5Q9Y5E4 795 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 FPGT-TNNI3KV9GXZ4 949 aa7.78□□□□□ -1.16
PRPF40A-210ENST00000489741 RLBP1P12271 317 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 ST13P50502 369 aaKnown RBP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 BACE1P56817 501 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 ETF1P62495 437 aaKnown RBP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 ZKSCAN2Q63HK3 967 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 NAA16Q6N069 864 aaPredicted RBP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 AGMOQ6ZNB7 445 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 TP53INP2Q8IXH6 220 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 SMCR8Q8TEV9 937 aaPredicted RBP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 FRAT1Q92837 279 aaPredicted RBP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 COA7Q96BR5 231 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 FBXL18Q96ME1 805 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 PSMG3-AS1Q96PY0 264 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 HTATIP2Q9BUP3 242 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 MIR1-1HGQ9H1L0 117 aa7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 AATFQ9NY61 560 aaKnown RBP eCLIP7.77□□□□□ -1.17
PRPF40A-210ENST00000489741 C19orf81C9J6K1 198 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 FARP2O94887 1054 aaPredicted RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 BAG3O95817 575 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 ASNSP08243 561 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 CTSHP09668 335 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 PABPC4Q13310 644 aaKnown RBP eCLIP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 SHROOM1Q2M3G4 852 aaPredicted RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 CCDC158Q5M9N0 1113 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 ARMCX6Q7L4S7 300 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 CYFIP1Q7L576 1253 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 TGFBRAP1Q8WUH2 860 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 USP6NLQ92738 828 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 EAF2Q96CJ1 260 aaPredicted RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 DEFB118Q96PH6 123 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 P2RX7Q99572 595 aaKnown RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 NOC4LQ9BVI4 516 aaKnown RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 PIH1D3Q9NQM4 214 aaKnown RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 RBPJLQ9UBG7 517 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 DBNLQ9UJU6 430 aaKnown RBP7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 COL6A3P12111 3177 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 MYH2Q9UKX2 1941 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 FLT1P17948 1338 aa7.76□□□□□ -1.17
PRPF40A-210ENST00000489741 SURF6O75683 361 aaKnown RBP7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 TFRCP02786 760 aaKnown RBP7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 HMGCRP04035 888 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 CDK8P49336 464 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 TTC39AQ5SRH9 613 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 MAP3K21Q5TCX8 1036 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 DIEXFQ68CQ4 756 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms