RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PCDHA10Q9Y5I2 948 aa15.73■□□□□ 0.11
SYNE1-226ENST00000488376 MAFBQ9Y5Q3 323 aaPredicted RBP15.73■□□□□ 0.11
SYNE1-226ENST00000488376 IGSF9BQ9UPX0 1349 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 CCNT1O60563 726 aaKnown RBP15.72■□□□□ 0.11
SYNE1-226ENST00000488376 PSAPP07602 524 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 ACTN1P12814 892 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 TMEM62Q0P6H9 643 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 MKRN4PQ13434 485 aaPredicted RBP15.72■□□□□ 0.11
SYNE1-226ENST00000488376 GRIN2CQ14957 1233 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 FAM26DQ5JW98 314 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 MTHFD1LQ6UB35 978 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 MOXD1Q6UVY6 613 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 POTEDQ86YR6 584 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 SMAP1Q8IYB5 467 aaPredicted RBP15.72■□□□□ 0.11
SYNE1-226ENST00000488376 HAS1Q92839 578 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 TEKT3Q9BXF9 490 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 KCNMB3Q9NPA1 279 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 SAMM50Q9Y512 469 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 GTF3C3Q9Y5Q9 886 aa15.72■□□□□ 0.11
SYNE1-226ENST00000488376 CHD9Q3L8U1 2897 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 TMEM150BA6NC51 233 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 RRN3P2A6NIE6 340 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 WDR64B1ANS9 1081 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 EML1O00423 815 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 GHRP10912 638 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 PLEKHG4Q58EX7 1191 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 TAF2Q6P1X5 1199 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.71■□□□□ 0.11
SYNE1-226ENST00000488376 SPRED2Q7Z698 418 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 ZSCAN31Q96LW9 406 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-226ENST00000488376 CDX2Q99626 313 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-226ENST00000488376 LLPHQ9BRT6 129 aaKnown RBP15.71■□□□□ 0.11
SYNE1-226ENST00000488376 ZNF576Q9H609 170 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 SH2B1Q9NRF2 756 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-226ENST00000488376 VAV3Q9UKW4 847 aa15.71■□□□□ 0.11
SYNE1-226ENST00000488376 SIP14410 1827 aa15.71■□□□□ 0.1
SYNE1-226ENST00000488376 CDH23Q9H251 3354 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 HBP1O60381 514 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 CAND2O75155 1236 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 BAIAP3O94812 1187 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 PARNO95453 639 aaKnown RBP15.7■□□□□ 0.1
SYNE1-226ENST00000488376 KLRC1P26715 233 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 SLC26A2P50443 739 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 PRKCEQ02156 737 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 LPIN1Q14693 890 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 PPP4R3AQ6IN85 833 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 RPAINQ86UA6 219 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 HERC6Q8IVU3 1022 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 CKAP2LQ8IYA6 745 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 MYLIPQ8WY64 445 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 TCEAL9Q9UHQ7 104 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 PCDHA2Q9Y5H9 948 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 CDY2AQ9Y6F7 541 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 PTPRSQ13332 1948 aa15.7■□□□□ 0.1
SYNE1-226ENST00000488376 LCHNA4D1U4 455 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 KIF28PB7ZC32 967 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 STBD1O95210 358 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 C22orf31O95567 290 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 MRPS6P82932 125 aaKnown RBP15.69■□□□□ 0.1
SYNE1-226ENST00000488376 TRIM29Q14134 588 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 RAB30Q15771 203 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 FAM117BQ6P1L5 589 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 MIER3Q7Z3K6 550 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 BANK1Q8NDB2 785 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 TMX3Q96JJ7 454 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 C8orf76Q96K31 380 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 PPP1R16BQ96T49 567 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 SLC9A7Q96T83 725 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 SH2D3AQ9BRG2 576 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 AGO3Q9H9G7 860 aaKnown RBP15.69■□□□□ 0.1
SYNE1-226ENST00000488376 UPF2Q9HAU5 1272 aaKnown RBP15.69■□□□□ 0.1
SYNE1-226ENST00000488376 CDHR5Q9HBB8 845 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 BRMS1Q9HCU9 246 aa15.69■□□□□ 0.1
SYNE1-226ENST00000488376 GBF1Q92538 1859 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 ABHD14A-ACY1A0A1B0GW23 586 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.68■□□□□ 0.1
SYNE1-226ENST00000488376 OATP04181 439 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 CA3P07451 260 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 GCFC2P16383 781 aaKnown RBP15.68■□□□□ 0.1
SYNE1-226ENST00000488376 SFNP31947 248 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 KCNJ6P48051 423 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 JAK3P52333 1124 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 IKBKEQ14164 716 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 ZNF484Q5JVG2 852 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 FBXO47Q5MNV8 452 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 KIAA0319LQ8IZA0 1049 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 BBXQ8WY36 941 aaPredicted RBP15.68■□□□□ 0.1
SYNE1-226ENST00000488376 BACH2Q9BYV9 841 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 WRAP73Q9P2S5 460 aaPredicted RBP15.68■□□□□ 0.1
SYNE1-226ENST00000488376 MSRAQ9UJ68 235 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 PCDHA11Q9Y5I1 949 aa15.68■□□□□ 0.1
SYNE1-226ENST00000488376 COL1A2P08123 1366 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 TMEM265A0A087WTH1 108 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 SMIM35A0A1B0GVV1 85 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 ST18O60284 1047 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 ATP2B1P20020 1258 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 CLCN3P51790 818 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 SPIRE1Q08AE8 756 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 PPP2R5CQ13362 524 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 RSPH3Q86UC2 560 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms