RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 LETM2Q2VYF4 491 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 TMTC3Q6ZXV5 915 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 ZC3H18Q86VM9 953 aaKnown RBP6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SPATA5Q8NB90 893 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 TRIM9Q9C026 710 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 ADAM22Q9P0K1 906 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 SIK3Q9Y2K2 1263 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 LRP6O75581 1613 aa6.77□□□□□ -1.33
VPS13D-209ENST00000487188 A0A1W2PRG0 241 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SPDYE5A6NIY4 337 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 GSG1L2A8MUP6 293 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SNX3O60493 162 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 LCA5LO95447 670 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 H2AFZP0C0S5 128 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ITGA4P13612 1032 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RFC5P40937 340 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PPP2R5EQ16537 467 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TCERG1LQ5VWI1 586 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ZNF449Q6P9G9 518 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 H2AFVQ71UI9 128 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ZSCAN29Q8IWY8 852 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 METTL13Q8N6R0 699 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SDR42E1Q8WUS8 393 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RPS6KC1Q96S38 1066 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 GORASP1Q9BQQ3 440 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SUDS3Q9H7L9 328 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 BMP2KQ9NSY1 1161 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 CTTNBP2NLQ9P2B4 639 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PNMA3Q9UL41 463 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TRIM33Q9UPN9 1127 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 THRAP3Q9Y2W1 955 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 A0A087X0T9 212 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 KLRC4O43908 158 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 DDAH1O94760 285 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 GCP02774 474 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 FAM228BP0C875 321 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 IFI35P80217 286 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 UBE4AQ14139 1066 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RCN2Q14257 317 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 LRRC41Q15345 812 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TMEM266Q2M3C6 531 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ZNF365Q70YC5 407 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PIGWQ7Z7B1 504 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ENAHQ8N8S7 591 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 DRAXINQ8NBI3 349 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 MIPOL1Q8TD10 442 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ACTRT1Q8TDG2 376 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 STMN2Q93045 179 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TLCD1Q96CP7 247 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 MTA3Q9BTC8 594 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PARP2Q9UGN5 583 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 NWD2Q9ULI1 1742 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 KIF1AQ12756 1690 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TOPAZ1Q8N9V7 1692 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 FAM170AA1A519 330 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TTC36A6NLP5 189 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 OR52Z1P0C646 297 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RASSF2P50749 326 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 CALCOCO2Q13137 446 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 GALNT15Q8N3T1 639 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 LRRC8CQ8TDW0 803 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 EPS8L3Q8TE67 593 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 U2AF1L4Q8WU68 220 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 MAIP1Q8WWC4 291 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ZNF317Q96PQ6 595 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PABPC3Q9H361 631 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ARHGEF10LQ9HCE6 1279 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 COL4A3BPQ9Y5P4 624 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 MYH7BA7E2Y1 1941 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 MAGEB6P1A0A0J9YX57 407 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TSPY2A6NKD2 308 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 CCNT1O60563 726 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 PHKG2P15735 406 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 KCNA3P22001 575 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 FGFR4P22455 802 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SERPINB4P48594 390 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 LRRC63Q05C16 580 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 SLC29A2Q14542 456 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 IL17AQ16552 155 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 HHATQ5VTY9 493 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ALKBH5Q6P6C2 394 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 FAM47EQ6ZV65 393 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 COL23A1Q86Y22 540 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 NELFCDQ8IXH7 590 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 KLHL23Q8NBE8 558 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 FAM81AQ8TBF8 368 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 BAP1Q92560 729 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TGS1Q96RS0 853 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 CCSER1Q9C0I3 900 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RNPEPL1Q9HAU8 725 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 RXFP1Q9HBX9 757 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 ANKIB1Q9P2G1 1089 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 STOML1Q9UBI4 398 aa6.76□□□□□ -1.33
VPS13D-209ENST00000487188 DBR1Q9UK59 544 aaKnown RBP6.76□□□□□ -1.33
VPS13D-209ENST00000487188 TRPM3Q9HCF6 1732 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-209ENST00000487188 GSTTP1A0A1W2PQM5 241 aa6.75□□□□□ -1.33
VPS13D-209ENST00000487188 TMEM110-MUSTN1A8MSY1 372 aa6.75□□□□□ -1.33
VPS13D-209ENST00000487188 O00370 1275 aa6.75□□□□□ -1.33
VPS13D-209ENST00000487188 NVLO15381 856 aaKnown RBP6.75□□□□□ -1.33
VPS13D-209ENST00000487188 ATP6V1C1P21283 382 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms