RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 UBLCP1Q8WVY7 318 aaPredicted RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 GPR101Q96P66 508 aaPredicted RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 SUCLA2Q9P2R7 463 aaPredicted RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 DDX20Q9UHI6 824 aaKnown RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 STXBP5LQ9Y2K9 1186 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 SPATA31A5Q5VU36 1347 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 SPATA31A7Q8IWB4 1347 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 TMCO5BA8MYB1 307 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 FLOT1O75955 427 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 AFPP02771 609 aaKnown RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 KRT18P05783 430 aaKnown RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 ANXA13P27216 316 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 MRPL12P52815 198 aaKnown RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 PPP2R2AP63151 447 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 NFIXQ14938 502 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 PTPROQ16827 1216 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 EXOC3L4Q17RC7 722 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 ARSHQ5FYA8 562 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 CCDC121Q6ZUS5 278 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 PEX26Q7Z412 305 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 RBM46Q8TBY0 533 aaKnown RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 NAP1L4Q99733 375 aaKnown RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 SLITRK6Q9H5Y7 841 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 BCCIPQ9P287 314 aaKnown RBP eCLIP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 ARMCX3Q9UH62 379 aaPredicted RBP13.33□□□□□ -0.28
COL3A1-206ENST00000487010 TRAF3IP3Q9Y228 551 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 PITPNM2Q9BZ72 1349 aa13.33□□□□□ -0.28
COL3A1-206ENST00000487010 A0A0A6YYK5 440 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 DAPK3O43293 454 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 RASSF9O75901 435 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ITGA4P13612 1032 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 TMOD1P28289 359 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 SLC12A3P55017 1021 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ZNF543Q08ER8 600 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 GRAPQ13588 217 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ODF2Q5BJF6 829 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 CCDC26Q8TAB7 109 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 GRAPLQ8TC17 118 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 SEC14L1Q92503 715 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ZHX3Q9H4I2 956 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ACTR5Q9H9F9 607 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 KLC4Q9NSK0 619 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 CNOT8Q9UFF9 292 aaKnown RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 SWAP70Q9UH65 585 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 AMACRQ9UHK6 382 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 ATF5Q9Y2D1 282 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 IGKV6D-41A0A0C4DH26 115 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 C5orf60A6NFR6 353 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 RPS6KA4O75676 772 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 PAEPP09466 180 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 H2AFZP0C0S5 128 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 CASP5P51878 434 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 EIF6P56537 245 aaKnown RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 EPHA7Q15375 998 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 QPCTQ16769 361 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 H2AFVQ71UI9 128 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 TMC3Q7Z5M5 1100 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 SYCE1Q8N0S2 351 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 FAM163AQ96GL9 167 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 UIMC1Q96RL1 719 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 DHX36Q9H2U1 1008 aaKnown RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 PSTPIP2Q9H939 334 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 CD209Q9NNX6 404 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 INTUQ9ULD6 942 aa13.32□□□□□ -0.28
COL3A1-206ENST00000487010 NOVA2Q9UNW9 492 aaKnown RBP13.32□□□□□ -0.28
COL3A1-206ENST00000487010 TTI1O43156 1089 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 MED24O75448 989 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 AKR1B1P15121 316 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 NPEPPSP55786 919 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 JAM2P57087 298 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 KNOP1Q1ED39 458 aaKnown RBP13.31□□□□□ -0.28
COL3A1-206ENST00000487010 TTBK2Q6IQ55 1244 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 BARGINQ6ZT62 677 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 NT5DC3Q86UY8 548 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 RAPGEF5Q92565 580 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 SLC40A1Q9NP59 571 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 KCNMB3Q9NPA1 279 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 SIX2Q9NPC8 291 aa13.31□□□□□ -0.28
COL3A1-206ENST00000487010 FOCADQ5VW36 1801 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 CHUKO15111 745 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 XRCC5P13010 732 aaKnown RBP13.3□□□□□ -0.28
COL3A1-206ENST00000487010 HOXD13P35453 343 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 MAP2K2P36507 400 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 PPARDQ03181 441 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 GIT2Q14161 759 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 RC3H1Q5TC82 1133 aaKnown RBP13.3□□□□□ -0.28
COL3A1-206ENST00000487010 DPP8Q6V1X1 898 aaPredicted RBP13.3□□□□□ -0.28
COL3A1-206ENST00000487010 EPM2AIP1Q7L775 607 aaPredicted RBP13.3□□□□□ -0.28
COL3A1-206ENST00000487010 VPS36Q86VN1 386 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 CLEC10AQ8IUN9 316 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 GPATCH11Q8N954 259 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 HES6Q96HZ4 224 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 SEC16BQ96JE7 1060 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 OSBPL7Q9BZF2 842 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 FAM114A2Q9NRY5 505 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 AJAP1Q9UKB5 411 aaPredicted RBP13.3□□□□□ -0.28
COL3A1-206ENST00000487010 GAKO14976 1311 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 LOC102724159A0A0B4J2E5 919 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 F8VZ95 297 aa13.3□□□□□ -0.28
COL3A1-206ENST00000487010 DDX3XO00571 662 aaKnown RBP eCLIP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms