RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PPP2CAP67775 309 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 ZNF460Q14592 562 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 LRSAM1Q6UWE0 723 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 C2orf69Q8N8R5 385 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 ASB15Q8WXK1 588 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 KATNBL1Q9H079 304 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 TMEM260Q9NX78 707 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 GALNT8Q9NY28 637 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 TNPO3Q9Y5L0 923 aaKnown RBP5.9□□□□□ -1.46
VPS41-213ENST00000485955 SLC12A8A0AV02 714 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 GLRX3O76003 335 aaKnown RBP5.89□□□□□ -1.47
VPS41-213ENST00000485955 NPTXRO95502 500 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 ASMTLO95671 621 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 ZNF888P0CJ79 500 aaPredicted RBP5.89□□□□□ -1.47
VPS41-213ENST00000485955 CSF2RBP32927 897 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 IL13RA1P78552 427 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 LCE5AQ5TCM9 118 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 ZCCHC8Q6NZY4 707 aaKnown RBP5.89□□□□□ -1.47
VPS41-213ENST00000485955 KCNH7Q9NS40 1196 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 SAMD15Q9P1V8 674 aa5.89□□□□□ -1.47
VPS41-213ENST00000485955 CNOT11Q9UKZ1 510 aaKnown RBP5.89□□□□□ -1.47
VPS41-213ENST00000485955 M0R2C6 588 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 TRAF5O00463 557 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 GPR42O15529 346 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 CNOT4O95628 575 aaKnown RBP5.88□□□□□ -1.47
VPS41-213ENST00000485955 APPP05067 770 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 POLD1P28340 1107 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 EPHB4P54760 987 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 TOP3AQ13472 1001 aaPredicted RBP5.88□□□□□ -1.47
VPS41-213ENST00000485955 TMEM132BQ14DG7 1078 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 C21orf62-AS1Q17RA5 79 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 SPATS1Q496A3 300 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 CATSPEREQ5SY80 951 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 GLB1LQ6UWU2 654 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 ARHGEF18Q6ZSZ5 1173 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 OTOP1Q7RTM1 612 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 WNK4Q96J92 1243 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 GBP4Q96PP9 640 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 SMPD4Q9NXE4 827 aa5.88□□□□□ -1.47
VPS41-213ENST00000485955 PRAMEF22A3QJZ6 481 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 GOLGA6L22H0YM25 854 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 DVL2O14641 736 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 FOXP2O15409 715 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 OPA1O60313 960 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 ASLP04424 464 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 IGFALSP35858 605 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 ECE1P42892 770 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 MAGEA10P43363 369 aaPredicted RBP5.87□□□□□ -1.47
VPS41-213ENST00000485955 IRF9Q00978 393 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 PABPC4Q13310 644 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS41-213ENST00000485955 STILQ15468 1287 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 SURF1Q15526 300 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 WDR72Q3MJ13 1102 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 DPP8Q6V1X1 898 aaPredicted RBP5.87□□□□□ -1.47
VPS41-213ENST00000485955 PLEKHH3Q7Z736 793 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 LOXL4Q96JB6 756 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 BTBD2Q9BX70 525 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 MEGF9Q9H1U4 602 aa5.87□□□□□ -1.47
VPS41-213ENST00000485955 NPEPPSL1A6NEC2 478 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 KRT37O76014 449 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 ADRB1P08588 477 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 SDHAP31040 664 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 ADCY8P40145 1251 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 CD83Q01151 205 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 NOLC1Q14978 699 aaKnown RBP eCLIP5.86□□□□□ -1.47
VPS41-213ENST00000485955 TKFCQ3LXA3 575 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 KANK2Q63ZY3 851 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 RALYLQ86SE5 291 aaKnown RBP5.86□□□□□ -1.47
VPS41-213ENST00000485955 DDX53Q86TM3 631 aaKnown RBP5.86□□□□□ -1.47
VPS41-213ENST00000485955 C8orf49Q96NF6 230 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 SAMD11Q96NU1 681 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 KRTAP3-1Q9BYR8 98 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 JADE2Q9NQC1 790 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 ST6GALNAC2Q9UJ37 374 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 CDC42EP3Q9UKI2 254 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 CD2APQ9Y5K6 639 aa5.86□□□□□ -1.47
VPS41-213ENST00000485955 B4E1Z4 1266 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 RFPL3O75679 317 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 JMJD7P0C870 316 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 USP10Q14694 798 aaKnown RBP5.85□□□□□ -1.47
VPS41-213ENST00000485955 ICAM4Q14773 271 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 PIK3R6Q5UE93 754 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 LARP4Q71RC2 724 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS41-213ENST00000485955 CXXC5Q7LFL8 322 aaKnown RBP5.85□□□□□ -1.47
VPS41-213ENST00000485955 GGNQ86UU5 652 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 REXO1L1PQ8IX06 675 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 HIPK4Q8NE63 616 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 ERCC4Q92889 916 aaPredicted RBP5.85□□□□□ -1.47
VPS41-213ENST00000485955 FOXRED1Q96CU9 486 aaPredicted RBP5.85□□□□□ -1.47
VPS41-213ENST00000485955 GNRHR2Q96P88 292 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 BOCQ9BWV1 1114 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 CARD11Q9BXL7 1154 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 ZDHHC5Q9C0B5 715 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 OR10A5Q9H207 317 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 SLC4A7Q9Y6M7 1214 aa5.85□□□□□ -1.47
VPS41-213ENST00000485955 PTPDC1A2A3K4 754 aa5.84□□□□□ -1.47
VPS41-213ENST00000485955 FAM83GA6ND36 823 aa5.84□□□□□ -1.47
VPS41-213ENST00000485955 HIP1RO75146 1068 aa5.84□□□□□ -1.47
VPS41-213ENST00000485955 KCNQ1P51787 676 aa5.84□□□□□ -1.47
VPS41-213ENST00000485955 RRADP55042 308 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms