RNA–Protein interactions for RNA: ENST00000483407.1

CSDE1-207, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 741 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-207ENST00000483407 DUSP9Q99956 384 aaKnown RBP6.9□□□□□ -1.3
CSDE1-207ENST00000483407 NOC4LQ9BVI4 516 aaKnown RBP6.9□□□□□ -1.3
CSDE1-207ENST00000483407 BACH2Q9BYV9 841 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 TRPV6Q9H1D0 765 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 RANBP17Q9H2T7 1088 aaKnown RBP6.9□□□□□ -1.3
CSDE1-207ENST00000483407 NKX2-4Q9H2Z4 354 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 PDGFCQ9NRA1 345 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 TOMM22Q9NS69 142 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.9□□□□□ -1.3
CSDE1-207ENST00000483407 SLC4A7Q9Y6M7 1214 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 RAD50Q92878 1312 aa6.9□□□□□ -1.3
CSDE1-207ENST00000483407 TTC28Q96AY4 2481 aa6.9□□□□□ -1.31
CSDE1-207ENST00000483407 CACNA1AO00555 2505 aa6.9□□□□□ -1.31
CSDE1-207ENST00000483407 PARP14Q460N5 1801 aa6.9□□□□□ -1.31
CSDE1-207ENST00000483407 PNMA6FA0A0J9YX94 578 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 PTPDC1A2A3K4 754 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 B4DLN1 442 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ORC4O43929 436 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 NMT2O60551 498 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 TOP1P11387 765 aaKnown RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ACTN1P12814 892 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ALDH5A1P51649 535 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 MRPL12P52815 198 aaKnown RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 PSMC6P62333 389 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 BAATQ14032 418 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ADGRE1Q14246 886 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 CCDC85BQ15834 202 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 C8orf34Q49A92 452 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ARSJQ5FYB0 599 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 RRP12Q5JTH9 1297 aaKnown RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 SYDE2Q5VT97 1194 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 TRIM46Q7Z4K8 759 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 TTC16Q8NEE8 873 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 OR6J1Q8NGC5 347 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 MORC4Q8TE76 937 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 FBF1Q8TES7 1133 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 WDR11Q9BZH6 1224 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 WNT8AQ9H1J5 351 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 DNAJC25Q9H1X3 360 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ALDH8A1Q9H2A2 487 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 CRISPLD1Q9H336 500 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 NEUROD4Q9HD90 331 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 IL17RBQ9NRM6 502 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ANAPC4Q9UJX5 808 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 YBX2Q9Y2T7 364 aaKnown RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 PCDHA11Q9Y5I1 949 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 GRIN2DO15399 1336 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 UMODL1Q5DID0 1318 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 COL11A1P12107 1806 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 GREB1LQ9C091 1923 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-207ENST00000483407 PRUNE2Q8WUY3 3088 aa6.89□□□□□ -1.31
CSDE1-207ENST00000483407 ZNFX1Q9P2E3 1918 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 PLXNA1Q9UIW2 1896 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TNKSO95271 1327 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 A0A1W2PNR3 127 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 A6NHS1 94 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 NFIBO00712 420 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 NKRFO15226 690 aaKnown RBP eCLIP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 ST8SIA5O15466 376 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 KPNA6O60684 536 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 MYL3P08590 195 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 BMP1P13497 986 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 ATP2A2P16615 1042 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RHOQP17081 205 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 CALML3P27482 149 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RFC2P35250 354 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 SLC16A2P36021 539 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 NOVP48745 357 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RABGGTBP53611 331 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 PURAQ00577 322 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 ORC1Q13415 861 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 PPP2R5BQ15173 497 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 ALX1Q15699 326 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 AAK1Q2M2I8 961 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TSNAXIP1Q2TAA8 658 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 FAM47CQ5HY64 1035 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TMEM67Q5HYA8 995 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TTBK2Q6IQ55 1244 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 BTNL9Q6UXG8 535 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 LRRC69Q6ZNQ3 347 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RNF207Q6ZRF8 634 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 MICALL1Q8N3F8 863 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 SCFD2Q8WU76 684 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 EVI5LQ96CN4 794 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 SCLYQ96I15 445 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 UHRF1Q96T88 793 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 MTG1Q9BT17 334 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 INCENPQ9NQS7 918 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 HELLSQ9NRZ9 838 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TCP11L1Q9NUJ3 509 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 TRMT13Q9NUP7 481 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RNF19AQ9NV58 838 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 RAPGEFL1Q9UHV5 662 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 FNDC3AQ9Y2H6 1198 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 DYRK1BQ9Y463 629 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 KCNMB2Q9Y691 235 aa6.88□□□□□ -1.31
CSDE1-207ENST00000483407 DDX49Q9Y6V7 483 aaKnown RBP6.88□□□□□ -1.31
CSDE1-207ENST00000483407 FRMPD2Q68DX3 1309 aaPredicted RBP6.87□□□□□ -1.31
CSDE1-207ENST00000483407 FIGNL2A6NMB9 653 aa6.87□□□□□ -1.31
CSDE1-207ENST00000483407 KIF28PB7ZC32 967 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms