RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 PCDHA1Q9Y5I3 950 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 MYH13Q9UKX3 1938 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 MARF1Q9Y4F3 1742 aaKnown RBP13.84□□□□□ -0.19
VPS52-218ENST00000482399 NEDD9Q14511 834 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 MESDQ14696 234 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 LRRC55Q6ZSA7 311 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 NEUROG2Q9H2A3 272 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 CASP4P49662 377 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 CDK17Q00537 523 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 TRIP13Q15645 432 aaPredicted RBP13.84□□□□□ -0.19
VPS52-218ENST00000482399 MEI1Q5TIA1 1274 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 HGSNATQ68CP4 663 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 BANK1Q8NDB2 785 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.84□□□□□ -0.196e-8■■■□□ 18.3
VPS52-218ENST00000482399 VEZTQ9HBM0 779 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 TBK1Q9UHD2 729 aa13.84□□□□□ -0.19
VPS52-218ENST00000482399 BAZ2AQ9UIF9 1905 aaKnown RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 DDX39AO00148 427 aaKnown RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 TRIM49P0CI25 452 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 TRIM49CP0CI26 452 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 FGFR4P22455 802 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 RFC4P35249 363 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 CACNB3P54284 484 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SKOR1P84550 965 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 ZNF844Q08AG5 666 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SNX1Q13596 522 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SPATS2Q86XZ4 545 aaKnown RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 PARP9Q8IXQ6 854 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 CCDC63Q8NA47 563 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 CCDC197Q8NCU1 140 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 PSMD1Q99460 953 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 AZI2Q9H6S1 392 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 GDF3Q9NR23 364 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 RSPH10B2B2RC85 870 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SPOPO43791 374 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SKAP2O75563 359 aaPredicted RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 ACSL3O95573 720 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 RSPH10BP0C881 870 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 AKR1B1P15121 316 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 CDC25CP30307 473 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 HOXA13P31271 388 aaPredicted RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 DR1Q01658 176 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 MTMR3Q13615 1198 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 CAPN12Q6ZSI9 719 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 SUGP1Q8IWZ8 645 aaKnown RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 GDAP1Q8TB36 358 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 TMBIM4Q9HC24 238 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 NAGPAQ9UK23 515 aa13.83□□□□□ -0.2
VPS52-218ENST00000482399 GOLGB1Q14789 3259 aaKnown RBP13.83□□□□□ -0.2
VPS52-218ENST00000482399 CAND2O75155 1236 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 MYBP10242 640 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 SCP2P22307 547 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 MYO1EQ12965 1108 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 SBK1Q52WX2 424 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 CYB5D1Q6P9G0 228 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 NT5C3AQ9H0P0 336 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 SCN11AQ9UI33 1791 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 CASP5P51878 434 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 ITGB3BPQ13352 177 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 AADACL2Q6P093 401 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 HOOK3Q86VS8 718 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 ERMNQ8TAM6 284 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 LBHD1Q9BQE6 289 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 ADAM33Q9BZ11 813 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 ISCUQ9H1K1 167 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 BCAS3Q9H6U6 928 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 DBR1Q9UK59 544 aaKnown RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 ZNF335Q9H4Z2 1342 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 GNA14O95837 355 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 MYCNP04198 464 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 RPL13P26373 211 aaKnown RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 GALCP54803 685 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 CUL1Q13616 776 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 FAM98CQ17RN3 349 aaKnown RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 ADGRF4Q8IZF3 695 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 PBKQ96KB5 322 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 INPP4AQ96PE3 977 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 LEMD3Q9Y2U8 911 aa13.82□□□□□ -0.2
VPS52-218ENST00000482399 COL5A2P05997 1499 aaPredicted RBP13.82□□□□□ -0.2
VPS52-218ENST00000482399 C4AP0C0L4 1744 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 C4BP0C0L5 1744 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 NID2Q14112 1375 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 CHN1P15882 459 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 PSMC6P62333 389 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 KCNA1Q09470 495 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 SPICE1Q8N0Z3 855 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 KIF2BQ8N4N8 673 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 SCFD1Q8WVM8 642 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 SH2D3AQ9BRG2 576 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 PCIF1Q9H4Z3 704 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 GEMIN8Q9NWZ8 242 aaKnown RBP13.81□□□□□ -0.2
VPS52-218ENST00000482399 RGL1Q9NZL6 768 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 CNOT8Q9UFF9 292 aaKnown RBP13.81□□□□□ -0.2
VPS52-218ENST00000482399 EXOC3O60645 756 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 NOL4O94818 638 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 PLCG2P16885 1265 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 KCNJ1P48048 391 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 USP11P51784 963 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 HS2ST1Q7LGA3 356 aa13.81□□□□□ -0.2
VPS52-218ENST00000482399 CNPY4Q8N129 248 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms