RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 HSCBQ8IWL3 235 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 ZC3H7AQ8IWR0 971 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 SMAP1Q8IYB5 467 aaPredicted RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 CPXCR1Q8N123 301 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 PPHLN1Q8NEY8 458 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 PCDH19Q8TAB3 1148 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 CHAC2Q8WUX2 184 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 FBXW5Q969U6 566 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 SKA1Q96BD8 255 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 MPP4Q96JB8 637 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 PPP1R16BQ96T49 567 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 ORAI3Q9BRQ5 295 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 TARS2Q9BW92 718 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 CELF4Q9BZC1 486 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 EPB41L1Q9H4G0 881 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 CAAP1Q9H8G2 361 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 SAGE1Q9NXZ1 904 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 GPR160Q9UJ42 338 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 FBXL7Q9UJT9 491 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 SYNPO2Q9UMS6 1093 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 GTF2A1LQ9UNN4 478 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 COA3Q9Y2R0 106 aaPredicted RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 RWDD3Q9Y3V2 267 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 A0A1W2PQJ5 194 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 A0A1W2PRQ8 180 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 ALG1L2C9J202 215 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 C22orf46C9J442 243 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 FIBPO43427 364 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 DGKIO75912 1065 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 FUCA1P04066 466 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 MSL3P1P0C860 447 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 KCNA6P17658 529 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 TNFAIP3P21580 790 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 FPR2P25090 351 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 PMLP29590 882 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 PPM1FP49593 454 aaPredicted RBP4.95□□□□□ -1.62
VPS41-212ENST00000482217 GUCY2FP51841 1108 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 NEK2P51955 445 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 NFKB2Q00653 900 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 MESP2Q0VG99 397 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 WASHC5Q12768 1159 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 ZNF460Q14592 562 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 CHRNA2Q15822 529 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 MLANAQ16655 118 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 CFAP100Q494V2 611 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 TIGD5Q53EQ6 642 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 HYIQ5T013 277 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 C16orf59Q7L2K0 433 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 ANKRD23Q86SG2 305 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 KIF18BQ86Y91 864 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 CHCHD4Q8N4Q1 142 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 USP33Q8TEY7 942 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 ATXN2LQ8WWM7 1075 aaKnown RBP4.95□□□□□ -1.62
VPS41-212ENST00000482217 SHISA4Q96DD7 197 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 LIN37Q96GY3 246 aaPredicted RBP4.95□□□□□ -1.62
VPS41-212ENST00000482217 SMAD5Q99717 465 aaKnown RBP4.95□□□□□ -1.62
VPS41-212ENST00000482217 CDH19Q9H159 772 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 CXorf56Q9H5V9 222 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 C19orf44Q9H6X5 657 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 IPPKQ9H8X2 491 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 CD248Q9HCU0 757 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 BTG4Q9NY30 223 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS41-212ENST00000482217 HDAC5Q9UQL6 1122 aa4.95□□□□□ -1.62
VPS41-212ENST00000482217 FAM83GA6ND36 823 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SRGAP3O43295 1099 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SNX2O60749 519 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 EFEMP2O95967 443 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 AGR2O95994 175 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 CKMP06732 381 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 JMJD7P0C870 316 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 GLI4P10075 376 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 ATICP31939 592 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 TRHRP34981 398 aaPredicted RBP4.94□□□□□ -1.62
VPS41-212ENST00000482217 HTR3AP46098 478 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SLC6A11P48066 632 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 NEK4P51957 841 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 ST5P78524 1137 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SPIRE1Q08AE8 756 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SPECC1Q5M775 1068 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 ZNF648Q5T619 568 aaPredicted RBP4.94□□□□□ -1.62
VPS41-212ENST00000482217 CDCA2Q69YH5 1023 aaPredicted RBP4.94□□□□□ -1.62
VPS41-212ENST00000482217 WWC2Q6AWC2 1192 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 PPP4R3AQ6IN85 833 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 CFAP161Q6P656 301 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 ABHD17CQ6PCB6 329 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 RNF180Q86T96 592 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 EGFL6Q8IUX8 553 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 TCEAL8Q8IYN2 117 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 NETO2Q8NC67 525 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 GOLGA1Q92805 767 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 TBC1D20Q96BZ9 403 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 PGBD4Q96DM1 585 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 WNK4Q96J92 1243 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 TTC14Q96N46 770 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS41-212ENST00000482217 CCDC8Q9H0W5 538 aaPredicted RBP4.94□□□□□ -1.62
VPS41-212ENST00000482217 TNFRSF12AQ9NP84 129 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 SAMD15Q9P1V8 674 aa4.94□□□□□ -1.62
VPS41-212ENST00000482217 PPARGC1AQ9UBK2 798 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms