RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 IFT88Q13099 833 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 GKAP1Q5VSY0 366 aaPredicted RBP14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 IRF2BP2Q7Z5L9 587 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 SLF2Q8IX21 1173 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 KLHL7Q8IXQ5 586 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 FAM133AQ8N9E0 248 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 CCDC114Q96M63 670 aa14.78□□□□□ -0.04
HLA-DMA-208ENST00000477541 CNTNAP4Q9C0A0 1308 aa14.77□□□□□ -0.04
HLA-DMA-208ENST00000477541 SLC37A4O43826 429 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 CEP104O60308 925 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 DNAJC8O75937 253 aaPredicted RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 AFPP02771 609 aaKnown RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 GSTA1P08263 222 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 GOLGA8HP0CJ92 632 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SNHG28P0DPA3 235 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 KLRK1P26718 216 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SLC8A1P32418 973 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 CLK2P49760 499 aaKnown RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SNCBQ16143 134 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 UAP1Q16222 522 aaPredicted RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 GPR162Q16538 588 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 MOXD1Q6UVY6 613 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 TMC4Q7Z404 712 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 TMC3Q7Z5M5 1100 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 TPCN2Q8NHX9 752 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 TATDN2Q93075 761 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SGSM3Q96HU1 749 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SPAG5Q96R06 1193 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 RABEP2Q9H5N1 569 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 SLC40A1Q9NP59 571 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 DDX20Q9UHI6 824 aaKnown RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 NAGPAQ9UK23 515 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 STXBP5LQ9Y2K9 1186 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 UTP11Q9Y3A2 253 aaKnown RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 NOC2LQ9Y3T9 749 aaKnown RBP14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 MYO3BQ8WXR4 1341 aa14.77□□□□□ -0.05
HLA-DMA-208ENST00000477541 POTEMA6NI47 508 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 KRIT1O00522 736 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 PPFIA2O75334 1257 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 H2AFZP0C0S5 128 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 FERP16591 822 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 MRPL12P52815 198 aaKnown RBP14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 SEC24CP53992 1094 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ATP2B2Q01814 1243 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 KCNH2Q12809 1159 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 XRCC4Q13426 336 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ADAM9Q13443 819 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ANKRD20A8PQ5CZ79 823 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ALKBH5Q6P6C2 394 aaKnown RBP14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 H2AFVQ71UI9 128 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 PEX26Q7Z412 305 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ZNF804AQ7Z570 1209 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 TLCD1Q96CP7 247 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 SEC16BQ96JE7 1060 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 PSMD1Q99460 953 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 EMILIN3Q9NT22 766 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 TFCP2L1Q9NZI6 479 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 DDX25Q9UHL0 483 aaKnown RBP14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 NCANO14594 1321 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 ARFGEF1Q9Y6D6 1849 aa14.76□□□□□ -0.05
HLA-DMA-208ENST00000477541 GPR75-ASB3A0A0A6YYF3 556 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PNMA6FA0A0J9YX94 578 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 FAM187AA6NFU0 413 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 WTIPA6NIX2 430 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 CALUO43852 315 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 TDP2O95551 362 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 NUDT17P0C025 328 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 UCHL3P15374 230 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 HPDP32754 393 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PTK2Q05397 1052 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 LRRC41Q15345 812 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 DPY19L2P1Q6NXN4 242 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 USP17L2Q6R6M4 530 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 KCNK18Q7Z418 384 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 GIMAP7Q8NHV1 300 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 TGFBRAP1Q8WUH2 860 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 CUL5Q93034 780 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 ZKSCAN4Q969J2 545 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 FAM163AQ96GL9 167 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 RTFDC1Q9BY42 306 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 FAM129AQ9BZQ8 928 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PPANQ9NQ55 473 aaKnown RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 ARMCX3Q9UH62 379 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 HDAC9Q9UKV0 1011 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 F8VZ95 297 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PDXKO00764 312 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PLA2G4BP0C869 781 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PDHBP11177 359 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 HSPA6P17066 643 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 RPL13P26373 211 aaKnown RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 DRG2P55039 364 aaKnown RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 BYSLQ13895 437 aaKnown RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 DHX34Q14147 1143 aaKnown RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 DDB1Q16531 1140 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 EXOC3L4Q17RC7 722 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 BMT2Q1RMZ1 405 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 ODF2Q5BJF6 829 aa14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 ZNF571Q7Z3V5 609 aaPredicted RBP14.75□□□□□ -0.05
HLA-DMA-208ENST00000477541 PARP9Q8IXQ6 854 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms