RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 POTEBQ6S5H4 581 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 MICALL1Q8N3F8 863 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 C17orf80Q9BSJ5 609 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 ZNF577Q9BSK1 485 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 FAM49AQ9H0Q0 323 aaPredicted RBP16.03■□□□□ 0.16
UPF3A-204ENST00000475218 PCDHA2Q9Y5H9 948 aa16.03■□□□□ 0.16
UPF3A-204ENST00000475218 SCRN1Q12765 414 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 MTHFD1LQ6UB35 978 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 CCDC148Q8NFR7 591 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 ATP8B4Q8TF62 1192 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 APBB2Q92870 758 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 IL17RAQ96F46 866 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 MTUS1Q9ULD2 1270 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 TPCN1Q9ULQ1 816 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 INSL6Q9Y581 213 aa16.02■□□□□ 0.15
UPF3A-204ENST00000475218 MSH4O15457 936 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 LINC00271P0C7V0 271 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 SLC26A2P50443 739 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 SETQ01105 290 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 SSRP1Q08945 709 aaKnown RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 TMEM62Q0P6H9 643 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 SWSAP1Q6NVH7 229 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 RTN4RL1Q86UN2 441 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 GJA10Q969M2 543 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 TGS1Q96RS0 853 aaKnown RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 RC3H2Q9HBD1 1191 aaKnown RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 THEGQ9P2T0 379 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 MAFBQ9Y5Q3 323 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-204ENST00000475218 TTC3P53804 2025 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 EVPLQ92817 2033 aa16.01■□□□□ 0.15
UPF3A-204ENST00000475218 UPP2O95045 317 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 DEXIO95424 95 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 CTDNEP1O95476 244 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 KLRC1P26715 233 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 NLRP5P59047 1200 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 ZNF746Q6NUN9 644 aaPredicted RBP16■□□□□ 0.15
UPF3A-204ENST00000475218 TSHZ1Q6ZSZ6 1077 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 CRIPAKQ8N1N5 446 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 BICD2Q8TD16 824 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 ATXN2LQ8WWM7 1075 aaKnown RBP16■□□□□ 0.15
UPF3A-204ENST00000475218 ZNF302Q9NR11 478 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 GJB4Q9NTQ9 266 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 TBC1D22BQ9NU19 505 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 PCDHA4Q9UN74 947 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 MYH9P35579 1960 aaKnown RBP16■□□□□ 0.15
UPF3A-204ENST00000475218 NLRC5Q86WI3 1866 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 SMIM35A0A1B0GVV1 85 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 ENPP3O14638 875 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 BACH1O14867 736 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 SEC24BO95487 1268 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 CD52P31358 61 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 TFF2Q03403 129 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 TJAP1Q5JTD0 557 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 PDXDC2PQ6P474 469 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 RSPH3Q86UC2 560 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 TRIM22Q8IYM9 498 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 KIAA0319LQ8IZA0 1049 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 DAGLBQ8NCG7 672 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 TBCKQ8TEA7 893 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 ASB2Q96Q27 587 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 CDHR5Q9HBB8 845 aa16■□□□□ 0.15
UPF3A-204ENST00000475218 ATG2AQ2TAZ0 1938 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 ZNF862O60290 1169 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 HBP1O60381 514 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 TDP2O95551 362 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 USP11P51784 963 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 MIS18BP1Q6P0N0 1132 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 BLIDQ8IZY5 108 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 SLC5A5Q92911 643 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 TMX1Q9H3N1 280 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 KCNJ14Q9UNX9 436 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 TRPV2Q9Y5S1 764 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 IGSF9BQ9UPX0 1349 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 KDM3AQ9Y4C1 1321 aa15.99■□□□□ 0.15
UPF3A-204ENST00000475218 PFKFB2O60825 505 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 LARGE1O95461 756 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 C22orf31O95567 290 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 ANAPC15P60006 121 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 KRT76Q01546 638 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 UGCGQ16739 394 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 FAM160B1Q5W0V3 765 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 B3GNT9Q6UX72 402 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 TMEM40Q8WWA1 233 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 MBOAT7Q96N66 472 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 CELF4Q9BZC1 486 aaKnown RBP15.98■□□□□ 0.15
UPF3A-204ENST00000475218 BDP1A6H8Y1 2624 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 COL1A2P08123 1366 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 RALGAPA2Q2PPJ7 1873 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 CYP3A7-CYP3A51PA0A087WV96 503 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 CPLX1O14810 134 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 GTPBP6O43824 516 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-204ENST00000475218 CYP3A7P24462 503 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 AK2P54819 239 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 EPC2Q52LR7 807 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 IER5Q5VY09 327 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 SMAP1Q8IYB5 467 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-204ENST00000475218 YME1L1Q96TA2 773 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 PHF20Q9BVI0 1012 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 GABBR1Q9UBS5 961 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 PADI3Q9ULW8 664 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms