RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-222ENST00000474742 USP10Q14694 798 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SMAD2Q15796 467 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 CCDC144BQ3MJ40 725 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 MTERF2Q49AM1 385 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PHF19Q5T6S3 580 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 TEPPQ6URK8 271 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 RSPO2Q6UXX9 243 aaPredicted RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 OTOP3Q7RTS5 596 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 LRP10Q7Z4F1 713 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 POLNQ7Z5Q5 900 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SGMS1Q86VZ5 419 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SCUBE1Q8IWY4 988 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 FUKQ8N0W3 1084 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 LRRC47Q8N1G4 583 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 GSTCDQ8NEC7 633 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 NUDT10Q8NFP7 164 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PCDH19Q8TAB3 1148 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 DCAF4Q8WV16 495 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 ZCCHC14Q8WYQ9 949 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 EDAQ92838 391 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 MKL1Q969V6 931 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 VOPP1Q96AW1 172 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 NUDT11Q96G61 164 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SRPK1Q96SB4 655 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 KCNJ15Q99712 375 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PRRX2Q99811 253 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 DHRS4Q9BTZ2 278 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 HIRIP3Q9BW71 556 aaPredicted RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 OSBPL2Q9H1P3 480 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SLC52A2Q9HAB3 445 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SMURF1Q9HCE7 757 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 TRIM39Q9HCM9 518 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PTGFRNQ9P2B2 879 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 MYOTQ9UBF9 498 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 ASH2LQ9UBL3 628 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PPP1R1BQ9UD71 204 aaPredicted RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 ADAM29Q9UKF5 820 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 CBLCQ9ULV8 474 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 ZNF652Q9Y2D9 606 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PCDHA9Q9Y5H5 950 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PCDHA8Q9Y5H6 950 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 DMRT1Q9Y5R6 373 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 PTCH2Q9Y6C5 1203 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 SLC4A7Q9Y6M7 1214 aa1.54□□□□□ -2.16
HDAC9-222ENST00000474742 POLR2AP24928 1970 aaKnown RBP1.54□□□□□ -2.16
HDAC9-222ENST00000474742 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 IQCA1LA6NCM1 817 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 TMEM191CA6NGB0 347 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 FAM90A27PA6NNH2 459 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 H0Y858 1186 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 ARVCFO00192 962 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 AGRPO00253 132 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 KRIT1O00522 736 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 MAN2B1O00754 1011 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 KCNK3O14649 394 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 WNT9AO14904 365 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 PPP1R12AO14974 1030 aaPredicted RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 KCNQ2O43526 872 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 RAD17O75943 681 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 SOD2P04179 222 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 SRGAP2CP0DJJ0 459 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 PYGMP11217 842 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 COL6A1P12109 1028 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 CR2P20023 1033 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 SDSP20132 328 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 GRK2P25098 689 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 ACRV1P26436 265 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 GRK3P35626 688 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 IL12RB1P42701 662 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 EPHA5P54756 1037 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 RRADP55042 308 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 JAM2P57087 298 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 GPR85P60893 370 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 IFRD2Q12894 506 aaPredicted RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 TUSC3Q13454 348 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 LONRF2Q1L5Z9 754 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 KRTAP15-1Q3LI76 137 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 TKFCQ3LXA3 575 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 C2orf27AQ580R0 203 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 TRIM61Q5EBN2 209 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 EPHA10Q5JZY3 1008 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 LAIR1Q6GTX8 287 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 DPH6Q7L8W6 267 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 OSTM1Q86WC4 334 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 TRIM48Q8IWZ4 208 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 IFNL3Q8IZI9 196 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 UHMK1Q8TAS1 419 aaKnown RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 PUM2Q8TB72 1066 aaKnown RBP eCLIP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 LARP4BQ92615 738 aaKnown RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 PTPRN2Q92932 1015 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 RNPC3Q96LT9 517 aaKnown RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 AGAP2Q99490 1192 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 CD244Q9BZW8 370 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 PDGFDQ9GZP0 370 aaPredicted RBP1.53□□□□□ -2.16
HDAC9-222ENST00000474742 SMOC1Q9H4F8 434 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 EPB41L1Q9H4G0 881 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 RIOX1Q9H6W3 641 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 SLC6A20Q9NP91 592 aa1.53□□□□□ -2.16
HDAC9-222ENST00000474742 DLL4Q9NR61 685 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms