RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 FOXD4L4Q8WXT5 416 aaPredicted RBP13.13□□□□□ -0.31
CUX1-207ENST00000465461 OSBPL7Q9BZF2 842 aa13.13□□□□□ -0.31
CUX1-207ENST00000465461 RGL1Q9NZL6 768 aa13.13□□□□□ -0.31
CUX1-207ENST00000465461 WRAP73Q9P2S5 460 aaPredicted RBP13.13□□□□□ -0.31
CUX1-207ENST00000465461 PCDHA12Q9UN75 941 aa13.13□□□□□ -0.31
CUX1-207ENST00000465461 IGSF9BQ9UPX0 1349 aa13.13□□□□□ -0.31
CUX1-207ENST00000465461 SCN5AQ14524 2016 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 WDR81Q562E7 1941 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 A0A087WWV3 80 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 POTEMA6NI47 508 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 STBD1O95210 358 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 CTSHP09668 335 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 OR52Z1P0C646 297 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 IQCF3P0C7M6 154 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 GNAT1P11488 350 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 TECP42680 631 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 PRKCEQ02156 737 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 CYP4A11Q02928 519 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 CTTNQ14247 550 aaKnown RBP13.12□□□□□ -0.31
CUX1-207ENST00000465461 SHHQ15465 462 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 ZNF618Q5T7W0 954 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 FAM173BQ6P4H8 233 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 TMEM199Q8N511 208 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 DNAJB3Q8WWF6 145 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 VWCEQ96DN2 955 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 DYDC2Q96IM9 177 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 TUBE1Q9UJT0 475 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 MTMR6Q9Y217 621 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 CEP290O15078 2479 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 KAT6AQ92794 2004 aa13.12□□□□□ -0.31
CUX1-207ENST00000465461 MYH9P35579 1960 aaKnown RBP13.11□□□□□ -0.31
CUX1-207ENST00000465461 ZBTB42B2RXF5 422 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 ZBTB39O15060 712 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 HBP1O60381 514 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 OATP04181 439 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 KLRC1P26715 233 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 BMP8BP34820 402 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 TRAPPC10P48553 1259 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 SLC26A2P50443 739 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 C1QBPQ07021 282 aaKnown RBP13.11□□□□□ -0.31
CUX1-207ENST00000465461 TMEM62Q0P6H9 643 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 RESTQ13127 1097 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 PTGDRQ13258 359 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 BFSP2Q13515 415 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 GPNMBQ14956 572 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 EPHA7Q15375 998 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 IL17AQ16552 155 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 TRAF7Q6Q0C0 670 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 MTHFD1LQ6UB35 978 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 LRRC8DQ7L1W4 858 aa13.11□□□□□ -0.31
CUX1-207ENST00000465461 BBXQ8WY36 941 aaPredicted RBP13.11□□□□□ -0.31
CUX1-207ENST00000465461 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.11□□□□□ -0.315e-11■□□□□ 10.1
CUX1-207ENST00000465461 FAM49AQ9H0Q0 323 aaPredicted RBP13.11□□□□□ -0.31
CUX1-207ENST00000465461 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.11□□□□□ -0.31
CUX1-207ENST00000465461 MBLAC1A4D2B0 266 aaPredicted RBP13.1□□□□□ -0.31
CUX1-207ENST00000465461 RRN3P2A6NIE6 340 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 DDX11L8A8MPP1 907 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 STX6O43752 255 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 SELPP16109 830 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 PDCP20941 246 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 PSMC5P62195 406 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 PPIGQ13427 754 aaKnown RBP eCLIP13.1□□□□□ -0.318e-9■■■□□ 18.5
CUX1-207ENST00000465461 MBTPS1Q14703 1052 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 TCTN1Q2MV58 587 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 RILPL1Q5EBL4 403 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 PLA2G4FQ68DD2 849 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 ZNF365Q70YC5 407 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 TPH2Q8IWU9 490 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 ZNF579Q8NAF0 562 aaKnown RBP13.1□□□□□ -0.31
CUX1-207ENST00000465461 RDM1Q8NG50 284 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 CAGE1Q8TC20 777 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 PPP1R16BQ96T49 567 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 EIF2AK1Q9BQI3 630 aaKnown RBP13.1□□□□□ -0.31
CUX1-207ENST00000465461 FTOQ9C0B1 505 aaKnown RBP eCLIP13.1□□□□□ -0.31
CUX1-207ENST00000465461 NRBP2Q9NSY0 501 aa13.1□□□□□ -0.31
CUX1-207ENST00000465461 SEPT9Q9UHD8 586 aaPredicted RBP13.1□□□□□ -0.31
CUX1-207ENST00000465461 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 NBNO60934 754 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 SLITRK3O94933 977 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 CHRNA1P02708 482 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 P4HBP07237 508 aaKnown RBP13.09□□□□□ -0.31
CUX1-207ENST00000465461 QARSP47897 775 aaKnown RBP13.09□□□□□ -0.31
CUX1-207ENST00000465461 NPEPPSP55786 919 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 PKP1Q13835 747 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 MTERF2Q49AM1 385 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 ZNF484Q5JVG2 852 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 TMEM240Q5SV17 173 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 OTOP2Q7RTS6 562 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 TDHQ8IZJ6 230 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 CCDC155Q8N6L0 562 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 LXNQ9BS40 222 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 IL23AQ9NPF7 189 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 PCDHA2Q9Y5H9 948 aa13.09□□□□□ -0.31
CUX1-207ENST00000465461 PP2D1A8MPX8 630 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 RSPH10B2B2RC85 870 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 MED24O75448 989 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 C22orf31O95567 290 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 RSPH10BP0C881 870 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 CEBPZQ03701 1054 aaKnown RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 RBL2Q08999 1139 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms