RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CUL4AQ13619 759 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 CEP55Q53EZ4 464 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 OXER1Q8TDS5 423 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 TBCKQ8TEA7 893 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 SEPT8Q92599 483 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 UHRF1Q96T88 793 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-205ENST00000465238 INSL6Q9Y581 213 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 NRCAMQ92823 1304 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 SIP14410 1827 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 LINC01553A4QN01 128 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 KCNA2P16389 499 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 TCF7P36402 384 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-205ENST00000465238 USP11P51784 963 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 ADAM17P78536 824 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 TFF2Q03403 129 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 FAM117BQ6P1L5 589 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.07■□□□□ 0.8
COL7A1-205ENST00000465238 DIS3L2Q8IYB7 885 aaKnown RBP20.07■□□□□ 0.8
COL7A1-205ENST00000465238 FBXO18Q8NFZ0 1043 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 LMBR1Q8WVP7 490 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 CRYGNQ8WXF5 182 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 TELO2Q9Y4R8 837 aa20.07■□□□□ 0.8
COL7A1-205ENST00000465238 TCF20Q9UGU0 1960 aaKnown RBP20.06■□□□□ 0.8
COL7A1-205ENST00000465238 BTBD18B2RXH4 712 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 ATP9AO75110 1047 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 CTSHP09668 335 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 BMP1P13497 986 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 NIPA1Q7RTP0 329 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 MYOCDQ8IZQ8 938 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 CYP2W1Q8TAV3 490 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 SUGCTQ9HAC7 445 aa20.06■□□□□ 0.8
COL7A1-205ENST00000465238 MEIS1O00470 390 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 HTRA4P83105 476 aaPredicted RBP20.05■□□□□ 0.8
COL7A1-205ENST00000465238 NR5A1Q13285 461 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 GNL2Q13823 731 aaKnown RBP20.05■□□□□ 0.8
COL7A1-205ENST00000465238 INF2Q27J81 1249 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 FAM26DQ5JW98 314 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 PIK3AP1Q6ZUJ8 805 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 PLA2G4DQ86XP0 818 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 GDPD5Q8WTR4 605 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 SEPT1Q8WYJ6 367 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 APBB2Q92870 758 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 KCNH7Q9NS40 1196 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 PKD2L1Q9P0L9 805 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 MTUS1Q9ULD2 1270 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 BRWD1Q9NSI6 2320 aa20.05■□□□□ 0.8
COL7A1-205ENST00000465238 FAM86B1E9PN63 330 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 FAM86B2P0C5J1 330 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 ARP10275 920 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 CIITAP33076 1130 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 TAF2Q6P1X5 1199 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 RPAINQ86UA6 219 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 SP7Q8TDD2 431 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-205ENST00000465238 HLA-CQ95604 372 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 INTS4Q96HW7 963 aaKnown RBP20.04■□□□□ 0.8
COL7A1-205ENST00000465238 ERAP1Q9NZ08 941 aa20.04■□□□□ 0.8
COL7A1-205ENST00000465238 GSTTP1A0A1W2PQM5 241 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 H3BQV1 296 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 KCNQ1P51787 676 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 SETQ01105 290 aaPredicted RBP20.03■□□□□ 0.8
COL7A1-205ENST00000465238 PPFIA1Q13136 1202 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 PRR16Q569H4 304 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 TNFRSF25Q93038 417 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 TOP1MTQ969P6 601 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 SMARCAD1Q9H4L7 1026 aa20.03■□□□□ 0.8
COL7A1-205ENST00000465238 IGLV3-22A0A075B6J6 115 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 RBAK-RBAKDNI3L0D1 243 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 LETM2Q2VYF4 491 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 LARP1BQ659C4 914 aaKnown RBP20.02■□□□□ 0.8
COL7A1-205ENST00000465238 NEK8Q86SG6 692 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 GLG1Q92896 1179 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 SAMD11Q96NU1 681 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 NAP1L4Q99733 375 aaKnown RBP20.02■□□□□ 0.8
COL7A1-205ENST00000465238 SDF4Q9BRK5 362 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 IFIH1Q9BYX4 1025 aaKnown RBP20.02■□□□□ 0.8
COL7A1-205ENST00000465238 OSBPL7Q9BZF2 842 aa20.02■□□□□ 0.8
COL7A1-205ENST00000465238 FOXP1Q9H334 677 aaPredicted RBP20.02■□□□□ 0.8
COL7A1-205ENST00000465238 AGO4Q9HCK5 861 aaKnown RBP20.02■□□□□ 0.8
COL7A1-205ENST00000465238 HSP90AA1P07900 732 aaKnown RBP20.01■□□□□ 0.79
COL7A1-205ENST00000465238 GRIK4Q16099 956 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 EARS2Q5JPH6 523 aaKnown RBP20.01■□□□□ 0.79
COL7A1-205ENST00000465238 MOXD1Q6UVY6 613 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 RSPH3Q86UC2 560 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 FBXO22Q8NEZ5 403 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 YME1L1Q96TA2 773 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 C17orf80Q9BSJ5 609 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 JPH1Q9HDC5 661 aaPredicted RBP20.01■□□□□ 0.79
COL7A1-205ENST00000465238 FOXD4L1Q9NU39 408 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 TUBE1Q9UJT0 475 aa20.01■□□□□ 0.79
COL7A1-205ENST00000465238 COL4A6Q14031 1691 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 CYP3A7-CYP3A51PA0A087WV96 503 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20■□□□□ 0.79
COL7A1-205ENST00000465238 FAM205CA6NFA0 338 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 EDIL3O43854 480 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 CHRNA1P02708 482 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 RPLP2P05387 115 aaKnown RBP20■□□□□ 0.79
COL7A1-205ENST00000465238 PDCP20941 246 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 CYP3A7P24462 503 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 MARK3P27448 753 aa20■□□□□ 0.79
COL7A1-205ENST00000465238 ZNF577Q9BSK1 485 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms