RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 ZNF577Q9BSK1 485 aa21.43■■□□□ 1.02
SF3A1-205ENST00000463818 COG5Q9UP83 839 aa21.43■■□□□ 1.02
SF3A1-205ENST00000463818 CYP46A1Q9Y6A2 500 aa21.43■■□□□ 1.02
SF3A1-205ENST00000463818 TNFRSF10AO00220 468 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 SWSAP1Q6NVH7 229 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 MIS18BP1Q6P0N0 1132 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 MTHFD1LQ6UB35 978 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 TSHZ1Q6ZSZ6 1077 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 CCDC148Q8NFR7 591 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 HLA-CQ95604 372 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 IL17RAQ96F46 866 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 LARP6Q9BRS8 491 aaKnown RBP21.42■■□□□ 1.02
SF3A1-205ENST00000463818 AGO3Q9H9G7 860 aaKnown RBP21.42■■□□□ 1.02
SF3A1-205ENST00000463818 ZNF302Q9NR11 478 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 TBC1D22BQ9NU19 505 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 VPS54Q9P1Q0 977 aa21.42■■□□□ 1.02
SF3A1-205ENST00000463818 HBP1O60381 514 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 KLRC1P26715 233 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 CD52P31358 61 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 CIITAP33076 1130 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 TMEM62Q0P6H9 643 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 EPC2Q52LR7 807 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 PRR16Q569H4 304 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 PDXDC2PQ6P474 469 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 CCDC60Q8IWA6 550 aaPredicted RBP21.41■■□□□ 1.02
SF3A1-205ENST00000463818 NME8Q8N427 588 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 ATP8B4Q8TF62 1192 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 SAMD11Q96NU1 681 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 TM6SF1Q9BZW5 370 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 TRPV2Q9Y5S1 764 aa21.41■■□□□ 1.02
SF3A1-205ENST00000463818 SPTBN5Q9NRC6 3674 aaKnown RBP21.41■■□□□ 1.02
SF3A1-205ENST00000463818 KAT6AQ92794 2004 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 SMIM35A0A1B0GVV1 85 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 KCNQ1P51787 676 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 SETQ01105 290 aaPredicted RBP21.4■■□□□ 1.02
SF3A1-205ENST00000463818 SSRP1Q08945 709 aaKnown RBP21.4■■□□□ 1.02
SF3A1-205ENST00000463818 TMEM192Q8IY95 271 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 UHRF1Q96T88 793 aaPredicted RBP21.4■■□□□ 1.02
SF3A1-205ENST00000463818 CELF4Q9BZC1 486 aaKnown RBP21.4■■□□□ 1.02
SF3A1-205ENST00000463818 SH3GLB2Q9NR46 395 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 SQORQ9Y6N5 450 aa21.4■■□□□ 1.02
SF3A1-205ENST00000463818 M0QZ92 97 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 EDIL3O43854 480 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 ATP4AP20648 1035 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 NLRP5P59047 1200 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 ZNF484Q5JVG2 852 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 ZNF746Q6NUN9 644 aaPredicted RBP21.39■■□□□ 1.01
SF3A1-205ENST00000463818 RTN4RL1Q86UN2 441 aaPredicted RBP21.39■■□□□ 1.01
SF3A1-205ENST00000463818 FIBCD1Q8N539 461 aa21.39■■□□□ 1.01
SF3A1-205ENST00000463818 ZNF274Q96GC6 653 aaPredicted RBP21.39■■□□□ 1.01
SF3A1-205ENST00000463818 UPF3BQ9BZI7 483 aaKnown RBP21.39■■□□□ 1.01
SF3A1-205ENST00000463818 TRANK1O15050 2925 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 GPM6BQ13491 265 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 CKAP2LQ8IYA6 745 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 TRIM22Q8IYM9 498 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 PDRG1Q9NUG6 133 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 PADI3Q9ULW8 664 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 PCDHA10Q9Y5I2 948 aa21.38■■□□□ 1.01
SF3A1-205ENST00000463818 MAFBQ9Y5Q3 323 aaPredicted RBP21.38■■□□□ 1.01
SF3A1-205ENST00000463818 H3BNC9 293 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 CPLX1O14810 134 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 PSAPP07602 524 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 USP11P51784 963 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 KRT76Q01546 638 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 STK3Q13188 491 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 TRMT1LQ7Z2T5 733 aaKnown RBP21.37■■□□□ 1.01
SF3A1-205ENST00000463818 KIAA0319LQ8IZA0 1049 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 LINC01599Q8WXQ3 324 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 LENG9Q96B70 501 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 MRPL38Q96DV4 380 aaKnown RBP21.37■■□□□ 1.01
SF3A1-205ENST00000463818 MICAL3Q7RTP6 2002 aa21.37■■□□□ 1.01
SF3A1-205ENST00000463818 KDM3AQ9Y4C1 1321 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 ZBTB42B2RXF5 422 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 PTPROQ16827 1216 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 SMAP1Q8IYB5 467 aaPredicted RBP21.36■■□□□ 1.01
SF3A1-205ENST00000463818 NECAB3Q96P71 396 aaPredicted RBP21.36■■□□□ 1.01
SF3A1-205ENST00000463818 FTHL17Q9BXU8 183 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 CDHR5Q9HBB8 845 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 GABBR1Q9UBS5 961 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 TCEAL9Q9UHQ7 104 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 COL1A2P08123 1366 aa21.36■■□□□ 1.01
SF3A1-205ENST00000463818 IGSF9BQ9UPX0 1349 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 MSH4O15457 936 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 DEXIO95424 95 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 PAK2Q13177 524 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 CPLX2Q6PUV4 134 aaKnown RBP21.35■■□□□ 1.01
SF3A1-205ENST00000463818 BBXQ8WY36 941 aaPredicted RBP21.35■■□□□ 1.01
SF3A1-205ENST00000463818 ZNF689Q96CS4 500 aaPredicted RBP21.35■■□□□ 1.01
SF3A1-205ENST00000463818 PPP4R2Q9NY27 417 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 PCDHA4Q9UN74 947 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 GINS2Q9Y248 185 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 SAMM50Q9Y512 469 aa21.35■■□□□ 1.01
SF3A1-205ENST00000463818 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.34■■□□□ 1.01
SF3A1-205ENST00000463818 DGKIO75912 1065 aa21.34■■□□□ 1.01
SF3A1-205ENST00000463818 BMPR1AP36894 532 aa21.34■■□□□ 1.01
SF3A1-205ENST00000463818 TMEM266Q2M3C6 531 aa21.34■■□□□ 1.01
SF3A1-205ENST00000463818 TBCKQ8TEA7 893 aa21.34■■□□□ 1.01
SF3A1-205ENST00000463818 RC3H2Q9HBD1 1191 aaKnown RBP21.34■■□□□ 1.01
SF3A1-205ENST00000463818 WDR64B1ANS9 1081 aa21.33■■□□□ 1.01
SF3A1-205ENST00000463818 C22orf31O95567 290 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms