RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 JAKMIP2Q96AA8 810 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 HVCN1Q96D96 273 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CEP95Q96GE4 821 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 LGR4Q9BXB1 951 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MMADHCQ9H3L0 296 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 STRN4Q9NRL3 753 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 KRT82Q9NSB4 513 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 POLKQ9UBT6 870 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MCM8Q9UJA3 840 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 KCNH4Q9UQ05 1017 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PRELID1Q9Y255 219 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MAGED1Q9Y5V3 778 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 POLR3AO14802 1390 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 USP47Q96K76 1375 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 GOLGA6L10A0A0M3HER8 536 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 A0A1B0GTH6 734 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 GSG1L2A8MUP6 293 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 H7C1W4 665 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 KDM1AO60341 852 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 PAHP00439 452 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SDSP20132 328 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 MSNP26038 577 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 CCNFP41002 786 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC19A1P41440 591 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 STRN3Q13033 797 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC129Q6ZRS4 1044 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 BEND5Q7L4P6 421 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 IFNL3Q8IZI9 196 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 LINC00528Q8N1L1 170 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 AFAP1L2Q8N4X5 818 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 LINC00469Q8N7U9 141 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 MAML1Q92585 1016 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 MTMR8Q96EF0 704 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 UTP14AQ9BVJ6 771 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 BRD8Q9H0E9 1235 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 EHMT1Q9H9B1 1298 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 DISC1Q9NRI5 854 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 ATG3Q9NT62 314 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 HDAC6Q9UBN7 1215 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 CEP131Q9UPN4 1083 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA31A1Q5TZJ5 1347 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 FIGNL2A6NMB9 653 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 ALG1L2C9J202 215 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 AKAP10O43572 662 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 ZNF189O75820 626 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 RHOBTB3O94955 611 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 REC8O95072 547 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 PSAPP07602 524 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 RPSAP08865 295 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 CD9P21926 228 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 DMPKQ09013 629 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 ALFQ53S48 1182 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 AKAP4Q5JQC9 854 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SH2D4BQ5SQS7 431 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 HGSNATQ68CP4 663 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC4A10Q6U841 1118 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 LYSMD3Q7Z3D4 306 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SDCCAG8Q86SQ7 713 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC84Q86UT8 332 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 C10orf67Q8IYJ2 551 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SYNPOQ8N3V7 929 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 PDCL2Q8N4E4 241 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 TEX9Q8N6V9 391 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 ZSCAN1Q8NBB4 408 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 LEO1Q8WVC0 666 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC35B4Q969S0 331 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 NAF1Q96HR8 494 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 MOGAT1Q96PD6 335 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 GAS2L1Q99501 681 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 TSEN34Q9BSV6 310 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 SEMA4AQ9H3S1 761 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 NCOA5Q9HCD5 579 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 NGRNQ9NPE2 291 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 PRDM11Q9NQV5 511 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 PKD2L1Q9P0L9 805 aa5.35□□□□□ -1.55
CCDC88A-209ENST00000456975 KLHL41O60662 606 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 DNAJA2O60884 412 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 SOX5P35711 763 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 MXI1P50539 228 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 ITKQ08881 620 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 LAPTM5Q13571 262 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 BOLA3Q53S33 107 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM83BQ5T0W9 1011 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 EMC10Q5UCC4 262 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 KIAA1211LQ6NV74 962 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 LRRTM3Q86VH5 581 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 LURAP1LQ8IV03 231 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 SULF2Q8IWU5 870 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 LRRC43Q8N309 656 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 NKAIN3Q8N8D7 197 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 GBP7Q8N8V2 638 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 C3orf20Q8ND61 904 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 SGCDQ92629 289 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 LRRC45Q96CN5 670 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 SYT17Q9BSW7 474 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 TSGA10Q9BZW7 698 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 ZC3H12CQ9C0D7 883 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 BHLHE41Q9C0J9 482 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 VCX3BQ9H321 246 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 CNNM2Q9H8M5 875 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms