RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 IER5LQ5T953 404 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 IQSEC1Q6DN90 963 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 METTL7BQ6UX53 244 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 IQUBQ8NA54 791 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 RASSF8Q8NHQ8 419 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 RAD54LQ92698 747 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 CALML4Q96GE6 196 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 TIGD1Q96MW7 591 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 LXNQ9BS40 222 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 NUP62CLQ9H1M0 184 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 GABBR1Q9UBS5 961 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 GNEQ9Y223 722 aaKnown RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 TRIM17Q9Y577 477 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 PCDHA10Q9Y5I2 948 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 IGKV6D-21A0A0A0MT36 114 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 NPHP3-ACAD11A0A0J9YXS1 232 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 SYCE3A1L190 88 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 WDR64B1ANS9 1081 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 P4HBP07237 508 aaKnown RBP12.29□□□□□ -0.44
SCN9A-205ENST00000454569 SUPT20HL2P0C7V6 817 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 TCF7P36402 384 aaPredicted RBP12.29□□□□□ -0.44
SCN9A-205ENST00000454569 TXLNAP40222 546 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 TNFAIP2Q03169 654 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 CUL4BQ13620 913 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 KCNV1Q6PIU1 500 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 RBM43Q6ZSC3 357 aaKnown RBP12.29□□□□□ -0.44
SCN9A-205ENST00000454569 TRIM50Q86XT4 487 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 AFG1LQ8WV93 481 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 SPATA33Q96N06 139 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 BEGAINQ9BUH8 593 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 OCEL1Q9H607 264 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 TUFT1Q9NNX1 390 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 KBTBD4Q9NVX7 518 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 CCDC39Q9UFE4 941 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 PTCH2Q9Y6C5 1203 aa12.29□□□□□ -0.44
SCN9A-205ENST00000454569 MYMKA6NI61 221 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 RBAK-RBAKDNI3L0D1 243 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 CTAGE5O15320 804 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 DYNC1LI2O43237 492 aaPredicted RBP12.28□□□□□ -0.44
SCN9A-205ENST00000454569 GH1P01241 217 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 JAK3P52333 1124 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 SLC12A3P55017 1021 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 ARSHQ5FYA8 562 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 UTP14CQ5TAP6 766 aaKnown RBP12.28□□□□□ -0.44
SCN9A-205ENST00000454569 HAUS3Q68CZ6 603 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 ISM2Q6H9L7 571 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 ERMNQ8TAM6 284 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 PPP1R13LQ8WUF5 828 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 SEPT1Q8WYJ6 367 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 CDK5RAP3Q96JB5 506 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 TNMDQ9H2S6 317 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 PCDHA5Q9Y5H7 936 aa12.28□□□□□ -0.44
SCN9A-205ENST00000454569 MYADML2A6NDP7 307 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 PSAPP07602 524 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 PLA2G4BP0C869 781 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 HSPA8P11142 646 aaKnown RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 HOXD10P28358 340 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 SFNP31947 248 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 QARSP47897 775 aaKnown RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 NPEPPSP55786 919 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 DPYDQ12882 1025 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 POSTNQ15063 836 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 MFSD14CQ5VZR4 134 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 PLA2G4FQ68DD2 849 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 ANO5Q75V66 913 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 SMAP1Q8IYB5 467 aaPredicted RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 GIMAP8Q8ND71 665 aaPredicted RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 OR6J1Q8NGC5 347 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 RAET1EQ8TD07 263 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 TMC2Q8TDI7 906 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 LARP4BQ92615 738 aaKnown RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 BHMT2Q9H2M3 363 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 BOLA1Q9Y3E2 137 aa12.27□□□□□ -0.44
SCN9A-205ENST00000454569 MAFBQ9Y5Q3 323 aaPredicted RBP12.27□□□□□ -0.44
SCN9A-205ENST00000454569 IGSF9BQ9UPX0 1349 aa12.27□□□□□ -0.45
SCN9A-205ENST00000454569 KDM3AQ9Y4C1 1321 aa12.27□□□□□ -0.45
SCN9A-205ENST00000454569 KLRC4O43908 158 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 LGR5O75473 907 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 SSBP05455 408 aaKnown RBP eCLIP12.26□□□□□ -0.45
SCN9A-205ENST00000454569 BMP6P22004 513 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 CNGA1P29973 690 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 PSMC5P62195 406 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 BEX3Q00994 111 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 RAD51AP2Q09MP3 1159 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 MAP3K21Q5TCX8 1036 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 MIS18BP1Q6P0N0 1132 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 DYMQ7RTS9 669 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 GAS2L3Q86XJ1 694 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 CEP57L1Q8IYX8 460 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 RDM1Q8NG50 284 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 SH3TC2Q8TF17 1288 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 EMID1Q96A84 441 aaPredicted RBP12.26□□□□□ -0.45
SCN9A-205ENST00000454569 FUCA2Q9BTY2 467 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 RUSC1Q9BVN2 902 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 NT5C3AQ9H0P0 336 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 ZSWIM4Q9H7M6 989 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 ZNF302Q9NR11 478 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 KIAA1468Q9P260 1216 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 STK17AQ9UEE5 414 aa12.26□□□□□ -0.45
SCN9A-205ENST00000454569 FAM184BQ9ULE4 1060 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms