RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TRIM51Q9BSJ1 452 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 DAGLAQ9Y4D2 1042 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 COL1A1P02452 1464 aaPredicted RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 TRIM49P0CI25 452 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 TRIM49CP0CI26 452 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 ARHGAP4P98171 946 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 HDLBPQ00341 1268 aaKnown RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 MTMR3Q13615 1198 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 ECM1Q16610 540 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 TEKT1Q969V4 418 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 CHORDC1Q9UHD1 332 aaPredicted RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 BZW2Q9Y6E2 419 aaKnown RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 RSPH10B2B2RC85 870 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 RSPH10BP0C881 870 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 ODR4Q5SWX8 454 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 DENND2CQ68D51 928 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 CCDC91Q7Z6B0 441 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 USP38Q8NB14 1042 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 ZNF473Q8WTR7 871 aaKnown RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 EDEM3Q9BZQ6 932 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 DBNDD1Q9H9R9 158 aa12.93□□□□□ -0.34
MSH6-204ENST00000445503 METTL14Q9HCE5 456 aaKnown RBP12.93□□□□□ -0.34
MSH6-204ENST00000445503 ARHGEF35A5YM69 484 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 RGS16O15492 202 aaPredicted RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 CTNND1O60716 968 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 PRLRP16471 622 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 CALRP27797 417 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 PPP4CP60510 307 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 SEPT2Q15019 361 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 LRRC55Q6ZSA7 311 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 MTRF1LQ9UGC7 380 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 BAIAP2L1Q9UHR4 511 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 DAAM1Q9Y4D1 1078 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 BAZ2AQ9UIF9 1905 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 GRID2IPA4D2P6 1211 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 MDH1P40925 334 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 CASP4P49662 377 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 E2F5Q15329 346 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 SLC10A5Q5PT55 438 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 ANKS4BQ8N8V4 417 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 SCFD1Q8WVM8 642 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 REEP2Q9BRK0 252 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 AMNQ9BXJ7 453 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 hCG_1984214I3L0E3 225 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 MED24O75448 989 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 CYP11B2P19099 503 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 NMT1P30419 496 aaKnown RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 PSMC6P62333 389 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 ADCY1Q08828 1119 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 GKAP1Q5VSY0 366 aaPredicted RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 ZNF746Q6NUN9 644 aaPredicted RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 ZNF713Q8N859 430 aaPredicted RBP12.92□□□□□ -0.34
MSH6-204ENST00000445503 RAB17Q9H0T7 212 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 DNAJC12Q9UKB3 198 aa12.92□□□□□ -0.34
MSH6-204ENST00000445503 GPR75-ASB3A0A0A6YYF3 556 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 GAS7O60861 476 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ITGA4P13612 1032 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 NF2P35240 595 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ACTN3Q08043 901 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 SEL1L2Q5TEA6 688 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ZNF571Q7Z3V5 609 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 METTL13Q8N6R0 699 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ANKRD42Q8N9B4 389 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 FMO2Q99518 471 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 DNAJC17Q9NVM6 304 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 TMOD4Q9NZQ9 345 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 SAMD15Q9P1V8 674 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 MEFVO15553 781 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 EEF2P13639 858 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 FERP16591 822 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 PHLDB2Q86SQ0 1253 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 MRRFQ96E11 262 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 MTMR9Q96QG7 549 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.91□□□□□ -0.347e-7■■□□□ 13.6
MSH6-204ENST00000445503 GLT8D2Q9H1C3 349 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 SIPA1L3O60292 1781 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 MAP2K2P36507 400 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 HSD17B3P37058 310 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 CALCOCO2Q13137 446 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 MCTP2Q6DN12 878 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 MSL3Q8N5Y2 521 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 CCDC127Q96BQ5 260 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 NAP1L3Q99457 506 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 EPN3Q9H201 632 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 TMOD2Q9NZR1 351 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 MYO5AQ9Y4I1 1855 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 PSMC2P35998 433 aaKnown RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 GALCP54803 685 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 SP4Q02446 784 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ZC2HC1CQ53FD0 456 aaPredicted RBP12.91□□□□□ -0.34
MSH6-204ENST00000445503 HOOK3Q86VS8 718 aa12.91□□□□□ -0.34
MSH6-204ENST00000445503 ZNF233A6NK53 670 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 TLR2O60603 784 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 CUL1Q13616 776 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 DRAP1Q14919 205 aaPredicted RBP12.9□□□□□ -0.34
MSH6-204ENST00000445503 HOOK2Q96ED9 719 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 ASIC3Q9UHC3 531 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 NAGPAQ9UK23 515 aa12.9□□□□□ -0.34
MSH6-204ENST00000445503 CD2APQ9Y5K6 639 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms