RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 PHACTR2O75167 634 aa17.58■□□□□ 0.41
SHQ1-202ENST00000444040 AFPP02771 609 aaKnown RBP17.58■□□□□ 0.41
SHQ1-202ENST00000444040 ASIC2Q16515 512 aa17.58■□□□□ 0.41
SHQ1-202ENST00000444040 WDR18Q9BV38 432 aa17.58■□□□□ 0.41
SHQ1-202ENST00000444040 PCDHGC5Q9Y5F6 944 aa17.58■□□□□ 0.41
SHQ1-202ENST00000444040 PALMO75781 387 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 UCHL3P15374 230 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 POLD1P28340 1107 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 ZNF76P36508 570 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 STAT2P52630 851 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 CCDC181Q5TID7 509 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 RINT1Q6NUQ1 792 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 OTOP1Q7RTM1 612 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 PACSIN1Q9BY11 444 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 POLD4Q9HCU8 107 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 OLFML3Q9NRN5 406 aa17.58■□□□□ 0.4
SHQ1-202ENST00000444040 PON1P27169 355 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 PAFAH1B1P43034 410 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 NAP1L1P55209 391 aaKnown RBP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 KCNA1Q09470 495 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 HINFPQ9BQA5 517 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 HERC5Q9UII4 1024 aaKnown RBP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 NR3C1P04150 777 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 XRCC5P13010 732 aaKnown RBP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 EPHA7Q15375 998 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 SLC30A10Q6XR72 485 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 ACER1Q8TDN7 264 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 RNF14Q9UBS8 474 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 AGPSO00116 658 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 SLC16A3O15427 465 aaKnown RBP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 RNF40O75150 1001 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 PSMD10O75832 226 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 SLITRK3O94933 977 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 MATR3P43243 847 aaKnown RBP eCLIP17.57■□□□□ 0.42e-9■■■■■ 36.1
SHQ1-202ENST00000444040 CASP4P49662 377 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 PTK2Q05397 1052 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 EXOC3L4Q17RC7 722 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 KIAA0753Q2KHM9 967 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 TEX2Q8IWB9 1127 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 CNKSR1Q969H4 720 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 SLC35C1Q96A29 364 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 MS4A14Q96JA4 679 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 RBM12Q9NTZ6 932 aaKnown RBP17.57■□□□□ 0.4
SHQ1-202ENST00000444040 TMX2Q9Y320 296 aa17.57■□□□□ 0.4
SHQ1-202ENST00000444040 TGFB1I1O43294 461 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 GCNT3O95395 438 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 ENOX2Q16206 610 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 SLC15A2Q16348 729 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 MUM1L1Q5H9M0 696 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 MEI1Q5TIA1 1274 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 ZNF571Q7Z3V5 609 aaPredicted RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 RBM46Q8TBY0 533 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 PIGOQ8TEQ8 1089 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 METTL14Q9HCE5 456 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 TUFT1Q9NNX1 390 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 BTNL10A8MVZ5 291 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 TBCAO75347 108 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 MRPS25P82663 173 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 SLC7A5Q01650 507 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 CTTNQ14247 550 aaKnown RBP17.56■□□□□ 0.4
SHQ1-202ENST00000444040 CFAP221Q4G0U5 840 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 SIX2Q9NPC8 291 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 FBXL5Q9UKA1 691 aa17.56■□□□□ 0.4
SHQ1-202ENST00000444040 SFI1A8K8P3 1242 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 CFBP00751 764 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 RPL13P26373 211 aaKnown RBP17.55■□□□□ 0.4
SHQ1-202ENST00000444040 C1orf186Q6ZWK4 172 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 BORCS6Q96GS4 357 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 ARHGEF10LQ9HCE6 1279 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 STIM2Q9P246 746 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 ZMYM2Q9UBW7 1377 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 FTCDO95954 541 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 GAP43P17677 238 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 GGCXP38435 758 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 PRKCIP41743 596 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 PPP2R5CQ13362 524 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 ZSCAN26Q16670 478 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 RIN2Q8WYP3 895 aaPredicted RBP17.55■□□□□ 0.4
SHQ1-202ENST00000444040 SLC5A5Q92911 643 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 DYDC2Q96IM9 177 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 SPAG5Q96R06 1193 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 FAM204AQ9H8W3 233 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 BZW2Q9Y6E2 419 aaKnown RBP17.55■□□□□ 0.4
SHQ1-202ENST00000444040 SMCHD1A6NHR9 2005 aa17.55■□□□□ 0.4
SHQ1-202ENST00000444040 GRID2IPA4D2P6 1211 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 TCP10L2B9ZVM9 353 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 CLIC2O15247 247 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 ACTN2P35609 894 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 TRAF1Q13077 416 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 DCAF17Q5H9S7 520 aaPredicted RBP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 C10orf76Q5T2E6 689 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 ZBTB39O15060 712 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 EIF3DO15371 548 aaKnown RBP eCLIP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 EPB41P11171 864 aaKnown RBP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 TNFRSF8P28908 595 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 GLE1Q53GS7 698 aaKnown RBP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 LRCH2Q5VUJ6 765 aa17.54■□□□□ 0.4
SHQ1-202ENST00000444040 TPH2Q8IWU9 490 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms