RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 CCDC170Q8IYT3 715 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 ACRBPQ8NEB7 543 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 WDR24Q96S15 920 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 PARVGQ9HBI0 331 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 LZTFL1Q9NQ48 299 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 TYW1Q9NV66 732 aaKnown RBP28.35■■■□□ 2.13
CPNE1-216ENST00000437340 CLEC11AQ9Y240 323 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 AFG3L2Q9Y4W6 797 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 MYPNQ86TC9 1320 aa28.35■■■□□ 2.13
CPNE1-216ENST00000437340 MYBP10242 640 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 GUCY2CP25092 1073 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 HOXD13P35453 343 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ANKRD7Q92527 254 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 WNK4Q96J92 1243 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 MAP7D2Q96T17 732 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ZSWIM4Q9H7M6 989 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 RLFQ13129 1914 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 LOXHD1Q8IVV2 1947 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 UBE4BO95155 1302 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 NR2F2P24468 414 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 CYLC1P35663 651 aaPredicted RBP28.34■■■□□ 2.13
CPNE1-216ENST00000437340 PPP2R3AQ06190 1150 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ITGB3BPQ13352 177 aaPredicted RBP28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ARHGAP29Q52LW3 1261 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 SH3D19Q5HYK7 790 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 NSMFQ6X4W1 530 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ZNF710Q8N1W2 664 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 MYO1AQ9UBC5 1043 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 ZNF214Q9UL59 606 aaPredicted RBP28.34■■■□□ 2.13
CPNE1-216ENST00000437340 PLAGL2Q9UPG8 496 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 UTP18Q9Y5J1 556 aaKnown RBP eCLIP28.34■■■□□ 2.13
CPNE1-216ENST00000437340 PTPRFP10586 1907 aa28.34■■■□□ 2.13
CPNE1-216ENST00000437340 PPP1R12BO60237 982 aaPredicted RBP28.33■■■□□ 2.13
CPNE1-216ENST00000437340 PRPF6O94906 941 aaKnown RBP28.33■■■□□ 2.13
CPNE1-216ENST00000437340 LYPLA2O95372 231 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 GCNT3O95395 438 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 RBM10P98175 930 aaKnown RBP28.33■■■□□ 2.13
CPNE1-216ENST00000437340 NCBP1Q09161 790 aaKnown RBP28.33■■■□□ 2.13
CPNE1-216ENST00000437340 VGLL4Q14135 290 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 ARHGEF16Q5VV41 709 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 FRMD5Q7Z6J6 570 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 RBM46Q8TBY0 533 aaKnown RBP28.33■■■□□ 2.13
CPNE1-216ENST00000437340 MMRN2Q9H8L6 949 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 RIPK3Q9Y572 518 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 SNCAIPQ9Y6H5 919 aa28.33■■■□□ 2.13
CPNE1-216ENST00000437340 RPL13P26373 211 aaKnown RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 KRT83P78385 493 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 MAP3K9P80192 1104 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 SNRNP48Q6IEG0 339 aaKnown RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 STXBP4Q6ZWJ1 553 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 MYCT1Q8N699 235 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 BANK1Q8NDB2 785 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 ARHGEF35A5YM69 484 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 DCAF8L1A6NGE4 600 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 DDX39AO00148 427 aaKnown RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 ZBTB39O15060 712 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 NF2P35240 595 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 BAATQ14032 418 aaPredicted RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 NFIL3Q16649 462 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 MAP1SQ66K74 1059 aaPredicted RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 ZNF662Q6ZS27 426 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 NEK11Q8NG66 645 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 FAM207AQ9NSI2 230 aaPredicted RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 HOXC10Q9NYD6 342 aa28.32■■■□□ 2.12
CPNE1-216ENST00000437340 DBR1Q9UK59 544 aaKnown RBP28.32■■■□□ 2.12
CPNE1-216ENST00000437340 SLC16A3O15427 465 aaKnown RBP28.31■■■□□ 2.12
CPNE1-216ENST00000437340 URI1O94763 535 aaPredicted RBP28.31■■■□□ 2.12
CPNE1-216ENST00000437340 TEX13BQ9BXU2 312 aa28.31■■■□□ 2.12
CPNE1-216ENST00000437340 MAFGO15525 162 aa28.3■■■□□ 2.12
CPNE1-216ENST00000437340 MYCLP12524 364 aaPredicted RBP28.3■■■□□ 2.12
CPNE1-216ENST00000437340 MOB2Q70IA6 237 aa28.3■■■□□ 2.12
CPNE1-216ENST00000437340 VSIG10LQ86VR7 867 aa28.3■■■□□ 2.12
CPNE1-216ENST00000437340 METTL14Q9HCE5 456 aaKnown RBP28.3■■■□□ 2.12
CPNE1-216ENST00000437340 PKD2L1Q9P0L9 805 aa28.3■■■□□ 2.12
CPNE1-216ENST00000437340 REXO2Q9Y3B8 237 aaKnown RBP28.3■■■□□ 2.12
CPNE1-216ENST00000437340 EIF3CLB5ME19 914 aaKnown RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 CCND2P30279 289 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 ARHGAP25P42331 645 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 QARSP47897 775 aaKnown RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 IREB2P48200 963 aaKnown RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 JAK3P52333 1124 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 KCNMA1Q12791 1236 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 EIF3CQ99613 913 aaKnown RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 NHEJ1Q9H9Q4 299 aaPredicted RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 ASTN1O14525 1302 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 SFNP31947 248 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 KRT76Q01546 638 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 TMEM132BQ14DG7 1078 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 GPRASP2Q96D09 838 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 FIZ1Q96SL8 496 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 NUCKS1Q9H1E3 243 aaKnown RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 HAUS4Q9H6D7 363 aa28.29■■■□□ 2.12
CPNE1-216ENST00000437340 ARMCX3Q9UH62 379 aaPredicted RBP28.29■■■□□ 2.12
CPNE1-216ENST00000437340 A0A0U1RQJ8 604 aa28.28■■■□□ 2.12
CPNE1-216ENST00000437340 SFI1A8K8P3 1242 aa28.28■■■□□ 2.12
CPNE1-216ENST00000437340 EPHB6O15197 1021 aa28.28■■■□□ 2.12
CPNE1-216ENST00000437340 NR3C1P04150 777 aa28.28■■■□□ 2.12
CPNE1-216ENST00000437340 ZNF720Q7Z2F6 126 aa28.28■■■□□ 2.12
CPNE1-216ENST00000437340 RDM1Q8NG50 284 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms